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- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1028656-1037772.18299.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R14 [1,029,005 / 1,037,772]
Amino acid sequence
Length: 854
>Cisavi.CG.ENS81.R14.1028656-1037772.18299.p
PLRLDIKRKLNARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNHETQVLVKSFEICDLPVR
ATRFVPRKNWVITGSVVWQLGSATPNFTLTGHDKGVNCVDYYSGGDKPYLISGADDRLTK
IWDYQNKTCVQTLEGHSQNIVCVSFHPELPIIMTGSEDGTIKIWHANTYRLETTLNYGME
RVWCISAMKGSNNIALGYDEGSIMIKLGREEPAMSMDGSGKIIWAKHSEIQQANLKAMAD
QDLKDGERLQLSVKDMGSCEVYPQTLKHNANGRFVVVCGDGEYIIYTAMALRNKAFGSAL
EFTWAQDSSEYAVRESGTSVKLFKNFKERKSFKPDFGAEGIFGGHLLGVRTSQGLAFYDW
EHLELVRRIEINPKNVFWSDNGDLVCITADESFYILKYDQSKIEESKENTDLVTEDGITD
AFSDDIGEVEEVVKTGLWVGDCFIYTNAVNRLNYYVGGEIVTIAHLDRVLYLLGYIPSDN
RLYLGDKELNVVSYSLLLSVLEYQTAVMREDFETADKVLPSIPKEQRTRVAHFLEKQGFK
PQAMAVTSDSEHKFELALGLGDLKIAYQLAQEAQVIISTLVPMTAEQKWKQLAELATRKC
EFGLAQECLRQAQDFGGLLLLATSAGNSTMVKSLADNAKAGGKNNVAFLSYFVTGQTDKC
LELLISTNRLPEAAFFARTYLPSQVSRVVQLWKVNLGESNKKAADALADPAKYENLFPNL
AESLVAEKYLAATEERRPASHYPVTPVNDERNVLEESAGFDPVSIPLIKVGDDEKVCFLT
QAVLKMSGSTISPPAIEQEEEEDCPKVIPQDEQVPQAPSSLDEYDDLELDIENLELDDDI
DTSGVNLDDELLED
Nucleotide sequence
Length: 2,983
>Cisavi.CG.ENS81.R14.1028656-1037772.18299.t
CCTTTACGCTTGGACATTAAGAGGAAATTAAATGCGAGGTCGGATCGAGTGAAATGTGTT
GATCTCCATCCAACTGAGCCATGGATGTTAGTTTCACTTTACAATGGTAATGTTCACATT
TGGAACCATGAAACTCAAGTCTTGGTCAAATCTTTTGAAATATGTGATCTTCCTGTCAGA
GCCACCCGTTTCGTTCCTCGTAAAAACTGGGTGATCACTGGTTCGGTGGTTTGGCAGCTT
GGTTCTGCAACACCAAATTTTACACTAACAGGACATGATAAAGGCGTCAATTGCGTGGAC
TACTACAGTGGGGGAGACAAGCCATACCTCATATCTGGAGCTGATGACAGACTTACAAAG
ATTTGGGACTACCAGAACAAGACATGTGTTCAGACACTAGAGGGACACTCACAGAACATT
GTGTGCGTCAGCTTTCACCCTGAGCTACCAATCATTATGACTGGCTCTGAAGATGGCACT
ATTAAGATTTGGCATGCGAATACCTACCGTCTTGAAACCACACTTAACTATGGCATGGAA
CGTGTGTGGTGCATATCTGCTATGAAGGGTTCAAACAACATTGCGCTTGGATATGATGAA
GGAAGTATAATGATTAAGCTTGGCAGGGAAGAGCCAGCTATGTCCATGGATGGCAGTGGA
AAGATCATATGGGCCAAGCACTCTGAGATACAACAAGCCAATTTGAAAGCAATGGCTGAC
CAGGACCTGAAGGATGGGGAGAGATTGCAGCTATCTGTGAAAGACATGGGTAGTTGTGAG
GTTTATCCACAAACACTGAAGCACAATGCAAATGGAAGATTCGTGGTGGTTTGTGGCGAT
GGGGAATACATCATATACACTGCTATGGCGCTGAGGAACAAAGCATTTGGTTCGGCTCTC
GAGTTTACATGGGCGCAAGATTCATCAGAGTATGCTGTGAGAGAAAGTGGCACTTCCGTT
AAGCTGTTCAAGAATTTTAAAGAGAGAAAATCATTCAAGCCTGACTTCGGGGCGGAAGGA
ATCTTTGGGGGTCATTTGCTTGGGGTTCGAACCTCGCAGGGGCTTGCTTTCTATGACTGG
GAGCATCTTGAACTTGTCCGCAGGATTGAGATCAACCCCAAAAATGTGTTTTGGTCGGAC
AACGGGGACCTGGTTTGCATCACCGCAGACGAATCGTTCTACATCCTCAAATACGATCAA
TCCAAGATCGAAGAATCGAAGGAAAACACCGACCTTGTTACAGAGGATGGTATCACTGAT
GCATTTAGCGATGACATCGGAGAGGTGGAAGAAGTAGTGAAGACTGGTTTGTGGGTGGGT
GATTGCTTCATATACACCAACGCGGTGAATCGACTGAACTACTATGTTGGTGGGGAGATT
GTCACCATCGCTCATTTGGACAGAGTTCTGTATTTGCTGGGCTACATTCCAAGTGATAAT
CGACTGTACCTTGGCGACAAGGAGCTCAATGTGGTGAGTTACTCCTTGCTGCTGTCCGTC
CTTGAATACCAAACTGCGGTGATGAGGGAGGATTTCGAGACGGCTGATAAAGTTCTTCCT
TCCATTCCTAAAGAGCAGAGGACCAGAGTCGCTCACTTCCTCGAGAAACAGGGATTCAAA
CCTCAAGCGATGGCCGTGACCAGCGACTCGGAACATAAATTTGAACTCGCTCTTGGATTG
GGTGACCTCAAAATAGCATACCAACTTGCACAAGAAGCCCAGGTAATCATTTCAACACTT
GTTCCAATGACTGCCGAACAAAAGTGGAAGCAGCTTGCAGAGCTGGCAACCCGGAAATGT
GAATTTGGATTAGCGCAGGAGTGTCTTCGACAGGCACAGGATTTCGGTGGCTTGTTGTTA
TTAGCCACATCTGCAGGAAATTCCACCATGGTCAAATCTCTTGCTGATAATGCCAAAGCT
GGAGGCAAAAACAACGTTGCTTTCCTGAGTTACTTTGTCACTGGTCAAACTGACAAGTGC
CTTGAACTCTTAATCAGCACCAACCGACTTCCTGAAGCTGCCTTTTTCGCACGAACTTAT
TTACCCAGTCAAGTCAGCAGAGTGGTGCAACTGTGGAAGGTGAACCTGGGTGAATCGAAC
AAGAAAGCTGCTGATGCACTTGCTGATCCGGCCAAATATGAAAATTTGTTTCCCAATCTC
GCTGAGAGTTTGGTTGCAGAGAAATATCTTGCTGCTACTGAAGAACGGAGACCTGCTTCC
CACTACCCAGTCACTCCAGTCAATGATGAGAGGAATGTTCTGGAAGAATCTGCAGGTTTC
GATCCCGTCTCCATTCCACTCATTAAAGTTGGCGACGATGAAAAGGTTTGTTTTCTTACT
CAAGCAGTTCTTAAAATGTCTGGATCGACAATTAGCCCACCTGCTATAGAGCAAGAAGAA
GAGGAGGATTGCCCCAAAGTGATTCCGCAAGATGAACAGGTGCCCCAGGCTCCCTCAAGC
TTGGACGAATATGACGACCTTGAACTTGACATTGAGAACTTGGAGTTGGACGATGATATT
GATACAAGTGGAGTTAATTTGGATGACGAACTTTTAGAAGATTAAACTTAAACTCATCGT
CTTATTTATATTACGTAGAAGCGCTTAACATTTTGTTTATGACTGAGCTATCACTCTCGT
GATACTTTTGGACCAGTGTGAGGAATTGGGTCGTTATGTAAGAAATTGATCCCATATTTA
CTCTTGTTGCGCAATAATCTATGGTTTGCAAGTTGCATATTGGCAGGAAGCTAGTATATT
GTACATAAAACTTCCTATTGTACCTTGCCTTAATATGCTTTGAAGTGAAAACGCTTAAAA
TTTTGACGGATTCAACATTTAGCCCACTTGTATTAAAATTTAAACCTTGCAGCAATTGTG
CAATATCCACACTCTGAAACAACTTCTATTTCAGTTAGTAAATGGTTGTAGCTTTAATGT
GGCGATTTAATGGTGCATTGACCAATAAAGCAAACCCAGATCA
| PIRSF |
COPB2 (IPR016453) - T[1-76] 9.7E-38 - T[75-763] 2.1E-300 |
| SMART |
WD40_repeat (IPR001680) - T[3-42] 0.1 - T[82-123] 2.8E-6 - T[126-165] 8.5E-11 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-201] 1.18E-44 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[10-174] 24.574 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-76] 4.8E-14 - T[77-325] 2.4E-49 |
| Pfam |
WD40_repeat (IPR001680) - T[85-123] 2.6E-5 - T[128-164] 4.3E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[89-132] 12.146 - T[133-174] 16.223 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[227-681] 3.8E-164 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[245-494] 1.88E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 22.647 % | 139 | 1.5E-33 |
| COPB2_HUMAN | 63.54 % | 1124 | 0 |
| LIS1_HUMAN | 38.636 % | 81.3 | 3.89E-16 |