- Transcript 'Cisavi.CG.ENS81.R132...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R132.1916071-1942947.11718.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
R132 [1,916,457 / 1,942,947]
Amino acid sequence
Length: 603
>Cisavi.CG.ENS81.R132.1916071-1942947.11718.p
TYQRKPSVDSQSTTTESSGSPPHALVLPPSPQPMSYYQPSTAQMFHGLRRSDSPQYKASN
HAAQSSNNDYHNQLMSQALSMAMLQPGFTPSYAGKLTKLPHPIDLQGFLLSAAAQAMSAA
LNPCQQSKNQTCDSRWNQPKFNLHSTPVNIQIFIECNVRHYLRHLSAVSPPSCDPRATKP
SDTSTGHAKRRKISDRDGPRDRNHPNDDSPTSGAITGDKCCASPDSIGLSSTGSSYSGSE
SDGIHPGQCPPSPPPPPRIYKPCFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCH
RNKQCLINKSTRSRCQFCRLQKCFQAGMLRESVRNDRNKKRGKEKEGKSPEQNDDVTCSP
EIEALVASVYKYHVDTFPLNSNLRKYKIASPVATTELETKKTDSNLWEKFAELSTKCIVK
IVEFAKGVPGFQDFTIADQITLLKCACLEVLFLRICSRFSPEQDTMTFSDGLTLTRKQMR
VCGFGPITEQVFTFAQSLYPLDADAAEIGLLSAICLVSADRPDLEEPDKVEMLQETLVEG
LKWYARKRRPNAPQVFPKLIIKISDLRSISLKGADRVVSVKSEIPSGAMPPLMSEMLEGD
ETD
Nucleotide sequence
Length: 1,904
>Cisavi.CG.ENS81.R132.1916071-1942947.11718.t
TAAGTTGTTTACACAGTTGCGGATTAGATTAATGTTTGGCCATGGAGATCCAAGATGATG
TATGTGGCGCAGACGAGAGCCGCATGAGATCAACGTACCAGAGAAAGCCGTCGGTGGACA
GCCAATCCACCACCACAGAGAGCAGTGGTTCCCCACCCCATGCCCTTGTATTACCACCTT
CACCACAGCCGATGTCGTATTACCAACCCAGCACTGCACAGATGTTCCATGGACTCCGAA
GGTCTGATTCACCACAATACAAAGCTAGCAACCATGCAGCACAAAGTAGCAATAATGATT
ATCACAACCAACTAATGTCTCAAGCCTTGTCGATGGCGATGTTGCAACCAGGGTTTACTC
CAAGTTACGCTGGTAAATTGACTAAACTTCCTCATCCCATAGATTTACAAGGCTTCCTAC
TGAGTGCAGCGGCACAGGCAATGAGTGCTGCGTTGAATCCGTGTCAACAAAGTAAGAACC
AAACCTGCGATAGTAGATGGAACCAACCTAAGTTTAACCTCCATTCCACACCAGTAAATA
TTCAAATATTTATTGAGTGTAACGTGCGTCATTACCTACGTCATTTGTCCGCAGTTAGCC
CGCCGTCGTGCGATCCAAGGGCAACCAAACCAAGCGACACAAGCACCGGGCATGCAAAGC
GCAGGAAAATATCGGATCGTGATGGACCACGTGATCGAAACCACCCGAACGACGACTCGC
CGACGAGTGGAGCGATTACAGGGGACAAGTGCTGTGCATCGCCCGATAGTATCGGCCTCT
CATCGACTGGCAGCAGCTATTCCGGCTCCGAGTCGGACGGGATCCATCCCGGCCAGTGCC
CGCCCTCACCGCCCCCGCCGCCCCGCATCTACAAACCGTGCTTTGTGTGCGGAGACAAGT
CATCGGGCTATCACTACGGCGTCGCTTCGTGCGAAGGCTGCAAGGGCTTCTTCCGCCGCA
GTGTGCAGAAGAACATGCAGTACACCTGCCACCGCAACAAGCAATGCCTCATCAACAAAT
CCACTAGGAGCAGATGTCAGTTCTGCAGACTCCAGAAGTGTTTCCAAGCTGGGATGCTTC
GTGAATCGGTGCGGAACGACCGCAACAAGAAGCGAGGCAAGGAGAAGGAGGGGAAATCCC
CCGAGCAGAACGATGACGTCACCTGCTCGCCTGAGATAGAAGCGCTGGTTGCATCTGTGT
ACAAATACCACGTTGATACCTTTCCGCTGAACTCCAATCTGCGGAAATACAAGATCGCGT
CTCCGGTCGCAACGACGGAACTCGAAACGAAGAAAACCGACTCCAATTTGTGGGAAAAAT
TCGCCGAGTTGTCGACCAAGTGCATTGTGAAGATCGTCGAATTTGCGAAGGGGGTTCCCG
GATTCCAGGACTTCACCATCGCTGACCAGATAACCCTGCTGAAGTGTGCCTGTCTCGAAG
TCTTGTTTCTTCGGATCTGTTCGCGCTTCTCGCCCGAGCAAGACACGATGACGTTTTCCG
ATGGTCTCACCCTCACCAGGAAGCAAATGAGGGTTTGTGGCTTCGGACCAATCACAGAGC
AGGTGTTCACATTCGCCCAATCATTGTACCCGCTCGATGCTGACGCTGCTGAGATTGGAT
TGTTGAGCGCGATTTGCCTCGTGTCGGCAGACCGCCCCGACCTAGAGGAGCCGGACAAGG
TGGAGATGCTACAGGAGACATTGGTGGAAGGATTGAAGTGGTACGCCCGCAAGCGACGAC
CCAACGCCCCCCAAGTCTTCCCCAAACTTATCATCAAAATATCCGATCTGCGGAGCATCA
GTTTGAAAGGAGCCGACCGCGTGGTGTCAGTAAAGAGCGAGATCCCGTCAGGCGCGATGC
CACCACTCATGTCCGAGATGTTGGAAGGCGACGAGACGGATTGA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[238-255] 2.5E-37 - T[405-422] 2.5E-37 - T[456-480] 2.5E-37 - T[493-505] 2.5E-37 - T[523-544] 2.5E-37 - T[567-582] 2.5E-37 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[257-359] 1.3E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[260-331] 9.0E-40 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[260-335] 20.678 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[262-329] 1.7E-31 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[263-279] 8.5E-19 - T[279-294] 8.5E-19 - T[312-320] 8.5E-19 - T[320-328] 8.5E-19 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[263-289] . |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[312-598] 6.42E-68 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[324-334] 7.4E-27 - T[413-434] 7.4E-27 - T[434-450] 7.4E-27 - T[501-516] 7.4E-27 - T[558-575] 7.4E-27 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[408-577] 7.3E-19 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[412-570] 3.5E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 62.209 % | 448 | 3.42E-153 |
| RARG_HUMAN | 61.919 % | 420 | 1.85E-142 |
| RARA_HUMAN | 62.5 % | 446 | 2.14E-152 |