- Transcript 'Moocul.CG.ELv1_2.S96...' >
- Transcript 'Cisavi.CG.ENS81.R132...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R132.1916071-1942947.11717.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
R132 [1,916,070 / 1,924,371]
Amino acid sequence
Length: 459
>Cisavi.CG.ENS81.R132.1916071-1942947.11717.p
MMNVMEFQEQWRNRMNGILTDIFQPNTSANDGQGMMQSNISMMDSPPPLQNLSLQPNNYH
RSYYQPPYYHAWDYTQRSSPDSIGLSSTGSSYSGSESDGIHPGQCPPSPPPPPRIYKPCF
VCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQFCRLQKCF
QAGMLRESVRNDRNKKRGKEKEGKSPEQNDDVTCSPEIEALVASVYKYHVDTFPLNSNLR
KYKIASPVATTELETKKTDSNLWEKFAELSTKCIVKIVEFAKGVPGFQDFTIADQITLLK
CACLEVLFLRICSRFSPEQDTMTFSDGLTLTRKQMRVCGFGPITEQVFTFAQSLYPLDAD
AAEIGLLSAICLVSADRPDLEEPDKVEMLQETLVEGLKWYARKRRPNAPQVFPKLIIKIS
DLRSISLKGADRVVSVKSEIPSGAMPPLMSEMLEGDETD
Nucleotide sequence
Length: 1,821
>Cisavi.CG.ENS81.R132.1916071-1942947.11717.t
AGCAGCACTAATATAGCATAGTCGTGTATAAGCAAAGTGCAGTGTTACGTCACAATGATG
AATGTGATGGAGTTCCAGGAACAATGGCGGAACCGAATGAACGGAATACTGACTGATATT
TTCCAACCGAATACGTCAGCAAATGACGGGCAAGGAATGATGCAAAGCAATATCTCCATG
ATGGACTCCCCGCCACCCCTGCAGAACCTCAGTCTACAGCCCAACAACTACCACCGATCG
TACTACCAGCCGCCGTATTACCACGCGTGGGATTATACGCAACGATCATCGCCCGATAGT
ATCGGCCTCTCATCGACTGGCAGCAGCTATTCCGGCTCCGAGTCGGACGGGATCCATCCC
GGCCAGTGCCCGCCCTCACCGCCCCCGCCGCCCCGCATCTACAAACCGTGCTTTGTGTGC
GGAGACAAGTCATCGGGCTATCACTACGGCGTCGCTTCGTGCGAAGGCTGCAAGGGCTTC
TTCCGCCGCAGTGTGCAGAAGAACATGCAGTACACCTGCCACCGCAACAAGCAATGCCTC
ATCAACAAATCCACTAGGAGCAGATGTCAGTTCTGCAGACTCCAGAAGTGTTTCCAAGCT
GGGATGCTTCGTGAATCGGTGCGGAACGACCGCAACAAGAAGCGAGGCAAGGAGAAGGAG
GGGAAATCCCCCGAGCAGAACGATGACGTCACCTGCTCGCCTGAGATAGAAGCGCTGGTT
GCATCTGTGTACAAATACCACGTTGATACCTTTCCGCTGAACTCCAATCTGCGGAAATAC
AAGATCGCGTCTCCGGTCGCAACGACGGAACTCGAAACGAAGAAAACCGACTCCAATTTG
TGGGAAAAATTCGCCGAGTTGTCGACCAAGTGCATTGTGAAGATCGTCGAATTTGCGAAG
GGGGTTCCCGGATTCCAGGACTTCACCATCGCTGACCAGATAACCCTGCTGAAGTGTGCC
TGTCTCGAAGTCTTGTTTCTTCGGATCTGTTCGCGCTTCTCGCCCGAGCAAGACACGATG
ACGTTTTCCGATGGTCTCACCCTCACCAGGAAGCAAATGAGGGTTTGTGGCTTCGGACCA
ATCACAGAGCAGGTGTTCACATTCGCCCAATCATTGTACCCGCTCGATGCTGACGCTGCT
GAGATTGGATTGTTGAGCGCGATTTGCCTCGTGTCGGCAGACCGCCCCGACCTAGAGGAG
CCGGACAAGGTGGAGATGCTACAGGAGACATTGGTGGAAGGATTGAAGTGGTACGCCCGC
AAGCGACGACCCAACGCCCCCCAAGTCTTCCCCAAACTTATCATCAAAATATCCGATCTG
CGGAGCATCAGTTTGAAAGGAGCCGACCGCGTGGTGTCAGTAAAGAGCGAGATCCCGTCA
GGCGCGATGCCACCACTCATGTCCGAGATGTTGGAAGGCGACGAGACGGATTGACGTCAT
CATATTATTACGTAATCGTGTGCAATTCGCTTCGTGGGTTAAGCGGCTGCTTTGCTTTGT
GATGTCATGACTGGGACATTCGCCTTGCCATTGTAATATAATTTGTGACGTCACTGGTAT
CGACTTCGGTAACCCCCCCTGATAAAGTTCAAAACACGTCATCAACTAATAGATAAGCGA
AGTGCCTTCCACCACCGCCGGTTACCCAGTGTTAATCGTTTTCTACTTTGGTTTTCTATT
TTACTTTTTACCCGAGTAAAACTTGTCTGTCGGAGGAGCCAATATTTCCTCAAATAGTAC
ATAAGTCGCGACGGAACTGGCAAACTGTGCATTATACTTGCCCCTGTGGGCAGCCCCCAA
TAAAGTATATTATTCATGCCA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[94-111] 4.7E-39 - T[188-201] 4.7E-39 - T[261-278] 4.7E-39 - T[312-336] 4.7E-39 - T[349-361] 4.7E-39 - T[379-400] 4.7E-39 - T[423-438] 4.7E-39 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[113-215] 8.2E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[116-191] 20.678 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[116-187] 9.0E-40 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[118-185] 1.1E-31 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[119-135] 3.3E-19 - T[135-150] 3.3E-19 - T[168-176] 3.3E-19 - T[176-184] 3.3E-19 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[119-145] . |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[168-454] 3.15E-68 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[180-190] 2.2E-27 - T[269-290] 2.2E-27 - T[290-306] 2.2E-27 - T[357-372] 2.2E-27 - T[414-431] 2.2E-27 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[263-433] 4.2E-19 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[268-426] 3.5E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 62.209 % | 446 | 1.86E-154 |
| RARG_HUMAN | 61.919 % | 418 | 8.86E-144 |
| RARA_HUMAN | 62.5 % | 444 | 1.31E-153 |