- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05614.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [267,573 / 287,770]
Amino acid sequence
Length: 1,343
>Cisavi.CG.ENS81.R131.263992-288199.05614.p
GVPGSQGLDGAPGPRGPKGERGTSGRDGNPGVPGNPGPPGPPGPGMDSVIKHFSFLKGLA
NSYSSGNKGPSGVIAGQPGAMGPRGQPGVSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPA
GIPGKDGKDGKDGRPGKTGPIGSHGPQGPRGFAGTPGLPGAKGHKGHAGLNGLKGESGLP
GADGESGAVGEAGPPGITGPRGLPGDRGRSGPAGEPGARGSDGLPGQSGPPGPTGNSGPP
GFPGSPGSKGEGGPTGARGPEGPQGSRGEAGTPGSSGPAGLPGSPGIDGASGAKGSTGAS
GIAGLPGIPGPRGSPGPQGNIGSSGPKGNTGNPGVQGFRGDQGPKGSQGSTGPQGLQGVQ
GEEGKRGSRGESGPPGQMGSQGERGQPGNRGFPGQDGSSGPKGASGRRGKPGLSGPKGSV
GDVGRSGEPGLPGPRGLTGKPGSDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFP
GSKGVGGEPGKSGEKGIAGPPGSRGLAGKDGEIGPAGQPGPSGVAGDRGEAGQPGPPGFQ
GLPGPPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFPGEAGSTGPQGLTGPRGAAGIP
GSDGQKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSKGERGDSGPPGLEGEPGKEGLR
GLTGPLGPPGAQGPNGEKGDGGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEGQP
GKKGDSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAGRP
GAPGDQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAFGLPGQPGEPGPSGEPGAPGGP
GASGLRGNPGSSGNPGLPGPSGSPGERGPAGLQGEEGKQGRSGLPGDRGPPGDIGPVGPA
GPSGDSGPEGMPGPEGAPGRDGSTGGEIGERGHTGPPGQAGMPGPPGLHGIEGKSGPRGE
PGPSGSQGAPGPEGGRGVPGPQGSRGDTGKTGDAGPRGSKGHRGYSGLQGLPGKTAIQGD
AGQPGAAGPQGLRGATGLRGPAGNDGSPGSPGPIGPTGPRGQSGEDGMRGPTGREGPPGP
PGPPGVSSSYFYVDRHQVFKLPGIDMAAFRFPAVSSFKGPNVAADQPVTSDVGRDPELTS
SVEDIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHT
METCVYPTNRNIENGTHYTGEPGHTYYGEEMTVEHADYASQLTFLRLLSSKAKQQVTFFC
RNMAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRPTQWDRTEIEFETRLVGRMPITD
IAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,032
>Cisavi.CG.ENS81.R131.263992-288199.05614.t
GGGGTCCCAGGATCACAAGGACTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGAGAA
CGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCAGGA
CCACCTGGACCAGGAATGGACAGCGTAATAAAACATTTCTCATTTTTAAAGGGACTGGCC
AACAGCTATTCATCTGGAAACAAGGGACCAAGTGGAGTCATCGCAGGCCAGCCTGGCGCT
ATGGGACCTAGAGGACAACCAGGTGTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGA
CCACCTGGCGAACCCGGCGAAGCTGGACCCAGTGGACCACCCGGACACATGGGGCCAGCA
GGCATCCCAGGAAAGGACGGAAAAGACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCT
ATCGGTTCTCATGGCCCACAGGGGCCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGT
GCCAAGGGCCACAAAGGTCACGCTGGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCT
GGAGCTGATGGCGAATCAGGAGCTGTAGGAGAAGCTGGACCCCCAGGAATTACCGGGCCA
CGAGGTTTGCCCGGCGACCGTGGTCGCTCTGGACCTGCTGGCGAACCTGGTGCAAGAGGT
TCCGATGGTCTACCTGGACAATCTGGCCCACCGGGACCAACTGGTAACTCTGGACCACCA
GGCTTCCCAGGTTCACCAGGATCTAAGGGTGAAGGAGGACCGACCGGTGCCAGAGGACCC
GAGGGACCACAGGGTTCCAGAGGCGAAGCCGGCACACCTGGCTCATCTGGCCCTGCTGGA
TTACCTGGCTCACCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTCAACTGGAGCCTCC
GGTATTGCTGGACTTCCAGGTATTCCAGGCCCAAGAGGATCACCTGGCCCGCAAGGAAAC
ATTGGTTCTTCTGGACCCAAAGGAAACACTGGAAACCCTGGAGTACAAGGTTTCAGAGGT
GACCAGGGACCAAAAGGAAGCCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAA
GGAGAAGAGGGCAAAAGGGGAAGCCGTGGCGAGTCTGGACCCCCAGGGCAAATGGGATCT
CAGGGAGAGAGGGGTCAACCCGGAAACCGTGGATTCCCGGGGCAAGACGGGAGCTCAGGT
CCCAAGGGAGCTAGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTT
GGAGATGTGGGAAGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAA
CCAGGTTCGGATGGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGA
CGACCAGGACCATCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCT
GGATCAAAGGGAGTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCA
CCTGGATCACGTGGTCTCGCCGGTAAAGACGGTGAAATTGGACCAGCGGGACAACCAGGA
CCTTCTGGAGTTGCAGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAA
GGTCTTCCAGGTCCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTG
CCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGT
GAGGCTGGTTCAACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCT
GGATCCGATGGACAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCA
CAAGGCGTCCAAGGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGC
GAACGAGGTGATTCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGG
GGCTTAACTGGACCTCTTGGGCCACCTGGAGCGCAAGGACCTAATGGAGAGAAGGGAGAC
GGCGGCAACGTTGGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAGAGAGGG
GAACCAGGACCTGATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGTCAACCT
GGAAAGAAGGGCGACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCTGGGCTA
CAAGGACCTGCCGGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGAGGA
GCTCGAGGGGCACTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGACGACCT
GGCGCTCCAGGAGATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCAGGAAAA
CCAGGATCCAAAGGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCATTCGGA
TTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGCGGTGAACCTGGTGCACCGGGAGGCCCT
GGTGCTTCTGGACTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGTCTACCTGGACCG
TCTGGATCACCTGGTGAGAGAGGACCAGCTGGATTGCAGGGTGAAGAGGGCAAACAAGGT
CGATCAGGTCTTCCCGGCGATCGTGGTCCTCCAGGCGACATCGGCCCTGTAGGACCTGCT
GGCCCATCTGGCGATTCTGGACCCGAGGGCATGCCTGGACCTGAAGGCGCACCTGGCCGC
GACGGATCCACTGGAGGTGAAATTGGTGAAAGAGGCCACACTGGGCCACCCGGACAAGCG
GGCATGCCTGGCCCACCTGGCCTACATGGCATTGAAGGAAAGAGTGGCCCACGCGGCGAA
CCAGGTCCATCAGGTTCGCAAGGCGCACCAGGCCCTGAAGGTGGTCGAGGCGTACCTGGT
CCACAAGGTAGTCGAGGTGACACTGGTAAAACTGGAGATGCTGGACCAAGGGGTAGCAAG
GGACACCGTGGTTACAGCGGTCTACAAGGTCTCCCAGGGAAAACGGCAATTCAAGGTGAT
GCAGGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGGAGCAACAGGACTCCGAGGT
CCAGCCGGCAATGACGGCTCACCTGGCTCACCTGGCCCCATTGGGCCCACAGGTCCACGT
GGTCAATCTGGTGAAGATGGTATGCGGGGACCCACTGGGCGCGAGGGACCACCTGGTCCA
CCAGGGCCTCCAGGGGTAAGTTCTTCATACTTTTATGTGGACAGGCATCAAGTTTTCAAA
TTACCTGGCATAGACATGGCAGCCTTCCGATTCCCAGCTGTGAGTTCATTCAAGGGACCA
AATGTGGCAGCTGACCAGCCAGTGACCAGTGATGTTGGACGTGATCCAGAGCTGACCAGC
TCAGTGGAAGACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGC
TTGGACATCTATTTGGCTGAACAACAGCAGGGAACTGTACCCAAGAGCGGTGTCCGATGG
ATCGATCCGAACGGCGGCTGCAACGCTGACGGACTCGAGGTTTACTGCAACTTCCACACA
ATGGAGACTTGCGTCTACCCGACCAACCGCAACATAGAGAACGGCACCCACTACACCGGC
GAGCCTGGACATACCTACTACGGCGAAGAGATGACAGTTGAGCACGCAGACTACGCCTCG
CAGCTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGC
CGCAACATGGCGCAAGCGCTGAAACTCCGTGGCTTCGGAGACGCCGAGTTCACCGCTGAG
GGCGCTGTCGGCACCACCTACAGAGTGTTGCACGATGGATGCTCTACCCGGCCGACGCAA
TGGGACCGAACCGAGATCGAGTTCGAGACCCGCCTGGTCGGAAGAATGCCGATCACGGAC
ATCGCTCCGTTCGACATCGGTGACGCGGATCAGCAGTTCGGCGCCAAGTTCGGCCCAGTC
TGCTTCAAATAA
| Pfam |
Collagen (IPR008160) - T[76-134] 3.4E-8 - T[184-241] 6.1E-7 - T[344-400] 6.1E-7 - T[373-430] 1.1E-8 - T[865-923] 3.2E-7 - T[932-989] 7.1E-7 - T[1022-1080] 6.3E-7 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1129-1343] 65.204 |
| SMART |
Fib_collagen_C (IPR000885) - T[1135-1343] 7.3E-69 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1137-1342] 2.2E-67 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1242-1342] 4.0E-39 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO5A2_HUMAN | 57.031 % | 490 | 3.13E-149 |
| CO1A2_HUMAN | 50.778 % | 652 | 0 |
| CO2A1_HUMAN | 62.203 % | 536 | 4.07E-166 |