- Transcript 'Phfumi.CG.MTP2014.S7...' >
- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05613.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,310 / 287,770]
Amino acid sequence
Length: 1,431
>Cisavi.CG.ENS81.R131.263992-288199.05613.p
CVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCKVCGDGPG
QKGEPGIIPDSIVSSGLFCFQGVPGSQGLDGAPGPRGPKGERGTSGRDGNPGVPGNPGPP
GPPGPGMDSVIKHFSFLKGLANSYSSGNKGPSGVIAGQPGAMGPRGQPGVSGSPGPQGFQ
GPPGEPGEAGPSGPPGHMGPAGIPGKDGKDGKDGRPGKTGPIGSHGPQGPRGFAGTPGLP
GAKGHKGHAGLNGLKGESGLPGADGESGAVGEAGPPGITGPRGLPGDRGRSGPAGEPGAR
GSDGLPGQSGPPGPTGNSGPPGFPGSPGSKGEGGPTGARGPEGPQGSRGEAGTPGSSGPA
GLPGSPGIDGASGAKGSTGASGIAGLPGIPGPRGSPGPQGNIGSSGPKGNTGNPGVQGFR
GDQGPKGSQGSTGPQGLQGVQGEEGKRGSRGESGPPGQMGSQGERGQPGNRGFPGQDGSS
GPKGASGRRGKPGLSGPKGSVGDVGRSGEPGLPGPRGLTGKPGSDGRQGKQGPSGPAGED
GRPGPSGATGQKGPPGQIGFPGSKGVGGEPGKSGEKGIAGPPGSRGLAGKDGEIGPAGQP
GPSGVAGDRGEAGQPGPPGFQGLPGPPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFP
GEAGSTGPQGLTGPRGAAGIPGSDGQKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSK
GERGDSGPPGLEGEPGKEGLRGLTGPLGPPGAQGPNGEKGDGGNVGPEGATGPRGSPGER
GEPGPDGPPGYPGSPGSEGQPGKKGDSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRR
GARGALGAPGPAGFPGPAGRPGAPGDQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAF
GLQGLPGQPGEPGPSGEPGAPGGPGASGLRGNPGSSGNPGLPGPSGSPEGKQGRSGLPGD
RGPPGDIGPVGPAGPSGDSGPEGMPGPEGAPGRDGSTGGEIGERGHTGPPGQAGMPGPPG
LHGIEGKSGPRGEPGPSGSQGAPGPEGGRGVPGPQGSRGDTGKTGDAGPRGSKGHRGYSG
LQGLPGKTAIQGDAGQPGAAGPQGLRGATGLRGPAGNDGSPGSPGPIGPTGPRGQSGEDG
MRGPTGREGPPGPPGPPGVSSSYFYVDRHQVFKLGPNVAADQPVTSDVGRDPEMMLVLKE
LTSSVEDIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVYCN
FHTMETCVYPTNRNIENGTHYTGEPGHTYYGEEMTDGSTVSYDPPAASRVEHADYASQLT
FLRLLSSKAKQQVTFFCRNMVAYYDASADNKAQALKLRGFGDAEFTAEGAVGTTYRVLHD
GCSTRPTQWDRTEIEFETRLVGRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,296
>Cisavi.CG.ENS81.R131.263992-288199.05613.t
TGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTATTCAAGCCGACCAAGTGCGAG
GTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTCATCCTTTGTGAAGTGCTAACC
TGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAAGTCTGTGGCGACGGACCAGGA
CAAAAAGGAGAACCTGGAATAATACCGGACTCTATTGTAAGTTCCGGTTTATTTTGCTTC
CAGGGGGTCCCAGGATCACAAGGACTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGA
GAACGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCA
GGACCACCTGGACCAGGAATGGACAGCGTAATAAAACATTTCTCATTTTTAAAGGGACTG
GCCAACAGCTATTCATCTGGAAACAAGGGACCAAGTGGAGTCATCGCAGGCCAGCCTGGC
GCTATGGGACCTAGAGGACAACCAGGTGTTTCTGGATCACCCGGACCGCAAGGATTTCAA
GGACCACCTGGCGAACCCGGCGAAGCTGGACCCAGTGGACCACCCGGACACATGGGGCCA
GCAGGCATCCCAGGAAAGGACGGAAAAGACGGCAAAGATGGGCGCCCCGGAAAAACAGGA
CCTATCGGTTCTCATGGCCCACAGGGGCCAAGAGGATTTGCCGGCACCCCTGGTCTTCCT
GGTGCCAAGGGCCACAAAGGTCACGCTGGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTA
CCTGGAGCTGATGGCGAATCAGGAGCTGTAGGAGAAGCTGGACCCCCAGGAATTACCGGG
CCACGAGGTTTGCCCGGCGACCGTGGTCGCTCTGGACCTGCTGGCGAACCTGGTGCAAGA
GGTTCCGATGGTCTACCTGGACAATCTGGCCCACCGGGACCAACTGGTAACTCTGGACCA
CCAGGCTTCCCAGGTTCACCAGGATCTAAGGGTGAAGGAGGACCGACCGGTGCCAGAGGA
CCCGAGGGACCACAGGGTTCCAGAGGCGAAGCCGGCACACCTGGCTCATCTGGCCCTGCT
GGATTACCTGGCTCACCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTCAACTGGAGCC
TCCGGTATTGCTGGACTTCCAGGTATTCCAGGCCCAAGAGGATCACCTGGCCCGCAAGGA
AACATTGGTTCTTCTGGACCCAAAGGAAACACTGGAAACCCTGGAGTACAAGGTTTCAGA
GGTGACCAGGGACCAAAAGGAAGCCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTC
CAAGGAGAAGAGGGCAAAAGGGGAAGCCGTGGCGAGTCTGGACCCCCAGGGCAAATGGGA
TCTCAGGGAGAGAGGGGTCAACCCGGAAACCGTGGATTCCCGGGGCAAGACGGGAGCTCA
GGTCCCAAGGGAGCTAGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCG
GTTGGAGATGTGGGAAGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGA
AAACCAGGTTCGGATGGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGAT
GGACGACCAGGACCATCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTC
CCTGGATCAAAGGGAGTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGA
CCACCTGGATCACGTGGTCTCGCCGGTAAAGACGGTGAAATTGGACCAGCGGGACAACCA
GGACCTTCTGGAGTTGCAGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTC
CAAGGTCTTCCAGGTCCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGT
GTGCCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCC
GGTGAGGCTGGTTCAACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATC
CCTGGATCCGATGGACAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGC
CCACAAGGCGTCCAAGGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAG
GGCGAACGAGGTGATTCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTT
AGGGGCTTAACTGGACCTCTTGGGCCACCTGGAGCGCAAGGACCTAATGGAGAGAAGGGA
GACGGCGGCAACGTTGGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAGAGA
GGGGAACCAGGACCTGATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGTCAA
CCTGGAAAGAAGGGCGACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCTGGG
CTACAAGGACCTGCCGGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGA
GGAGCTCGAGGGGCACTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGACGA
CCTGGCGCTCCAGGAGATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCAGGA
AAACCAGGATCCAAAGGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCATTC
GGTCTACAAGGATTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGCGGTGAACCTGGTGCA
CCGGGAGGCCCTGGTGCTTCTGGACTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGT
CTACCTGGACCGTCTGGATCACCTGAGGGCAAACAAGGTCGATCAGGTCTTCCCGGCGAT
CGTGGTCCTCCAGGCGACATCGGCCCTGTAGGACCTGCTGGCCCATCTGGCGATTCTGGA
CCCGAGGGCATGCCTGGACCTGAAGGCGCACCTGGCCGCGACGGATCCACTGGAGGTGAA
ATTGGTGAAAGAGGCCACACTGGGCCACCCGGACAAGCGGGCATGCCTGGCCCACCTGGC
CTACATGGCATTGAAGGAAAGAGTGGCCCACGCGGCGAACCAGGTCCATCAGGTTCGCAA
GGCGCACCAGGCCCTGAAGGTGGTCGAGGCGTACCTGGTCCACAAGGTAGTCGAGGTGAC
ACTGGTAAAACTGGAGATGCTGGACCAAGGGGTAGCAAGGGACACCGTGGTTACAGCGGT
CTACAAGGTCTCCCAGGGAAAACGGCAATTCAAGGTGATGCAGGGCAACCTGGTGCAGCT
GGTCCACAAGGTCTTCGAGGAGCAACAGGACTCCGAGGTCCAGCCGGCAATGACGGCTCA
CCTGGCTCACCTGGCCCCATTGGGCCCACAGGTCCACGTGGTCAATCTGGTGAAGATGGT
ATGCGGGGACCCACTGGGCGCGAGGGACCACCTGGTCCACCAGGGCCTCCAGGGGTAAGT
TCTTCATACTTTTATGTGGACAGGCATCAAGTTTTCAAATTAGGACCAAATGTGGCAGCT
GACCAGCCAGTGACCAGTGATGTTGGACGTGATCCAGAGATGATGTTGGTCTTGAAAGAG
CTGACCAGCTCAGTGGAAGACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACGCCAGCT
CGGTCGTGCTTGGACATCTATTTGGCTGAACAACAGCAGGGAACTGTACCCAAGAGCGGT
GTCCGATGGATCGATCCGAACGGCGGCTGCAACGCTGACGGACTCGAGGTTTACTGCAAC
TTCCACACAATGGAGACTTGCGTCTACCCGACCAACCGCAACATAGAGAACGGCACCCAC
TACACCGGCGAGCCTGGACATACCTACTACGGCGAAGAGATGACCGACGGTTCAACGGTG
TCATACGATCCTCCTGCGGCAAGCAGAGTTGAGCACGCAGACTACGCCTCGCAGCTCACG
TTCCTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGCCGCAACATG
GTGGCTTACTACGATGCTTCGGCCGACAACAAGGCGCAAGCGCTGAAACTCCGTGGCTTC
GGAGACGCCGAGTTCACCGCTGAGGGCGCTGTCGGCACCACCTACAGAGTGTTGCACGAT
GGATGCTCTACCCGGCCGACGCAATGGGACCGAACCGAGATCGAGTTCGAGACCCGCCTG
GTCGGAAGAATGCCGATCACGGACATCGCTCCGTTCGACATCGGTGACGCGGATCAGCAG
TTCGGCGCCAAGTTCGGCCCAGTCTGCTTCAAATAA
| Pfam |
VWF_dom (IPR001007) - T[1-55] 2.1E-10 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[1-56] 11.345 |
| SMART |
VWF_dom (IPR001007) - T[1-55] 4.3E-12 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[19-55] . |
| Pfam |
Collagen (IPR008160) - T[82-124] 1.2E-7 - T[157-214] 3.4E-8 - T[892-948] 8.8E-7 - T[949-998] 5.9E-7 - T[999-1056] 4.5E-7 - T[1101-1158] 3.0E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1191-1431] 4.8E-85 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1191-1430] 1.8E-84 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1192-1431] 72.861 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1319-1430] 5.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO5A2_HUMAN | 56.982 % | 493 | 1.18E-149 |
| CO1A2_HUMAN | 51.767 % | 688 | 0 |
| CO2A1_HUMAN | 60.633 % | 592 | 0 |