- Transcript 'KH2012:KH.S1104.4.v1...' >
- Transcript 'Cisavi.CG.ENS81.R15....' >
- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05612.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,304 / 287,770]
Amino acid sequence
Length: 1,425
>Cisavi.CG.ENS81.R131.263992-288199.05612.p
GGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCKVCGDG
PVFCFQGVPGSQGLDGAPGPRGPKGERGTSGRDGNPGVPGNPGPPGPPGPGMDSVSGYNG
LANSYSSGNKGPSGGAMGPRGQPGVSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPAGIPG
KDGKDGKDGRPGKTGPIGSHGPQGPRGFAGTPGLPGAKGHKGHAGLNGLKGESGLPGADG
ESGAVGEAGPPGITGPRGLPGDRGRSGPAGEPGARGSDGLPGQSGPPGPTGNSGPPGFPG
SPGSKGEGGPTGARGPEGPQGSRGEAGTPGSSGPAGLPGSPGIDGASGAKGSTGASGIAG
LPGIPGPRGSPGPQGNIGSSGPKGNTGNPGVQGFRGDQGPKGSQGSTGPQGLQGVQGEEG
KRGSRGESGPPGQMGSQGERGQPGNRGFPGQDGSSGPKGASGRRGKPGLSGPKGSVGDVG
RSGEPGLPGPRGLTGKPGSDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFPGSKG
VGGEPGKSGEKGIAGPPGSRGLAGKDGEIGPAGQPGPSGVAGDRGEAGQPGPPGFQGLPG
PPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFPGEAGSTGPQGLTGPRGAAGIPGSDG
QKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSKGERGDSGPPGLEGEPGKEGLRGLTG
PLGPPGAQGPNGEKGDGGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEGQPGKKG
DSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAGRPGAPG
DQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAFGLPGQPGEPGPSGEPGAPGGPGASG
LRGNPGSSGNPGLPGPSGSPGERGPAGLQGFGNYVGEEGKQGRSGLPGDRGPPGDIGPVG
PAGPSGDSGPEGMPGPEGAPGRDGSTGVKGEIGERGHTGPPGQAGMPGPPGLHGIEGKSG
PRGEPGPSGSQGAPGPEGGRGVPGPQGSRGDTGKTGDAGPRGSKGHRGYSGLQGLPGKTA
IQGDAGQPGAAGPQGLRGATGLRGPAGNDGSPGSPGPIGPTGPRGQSGEDGMRGPTGREG
PPGPPGPPGPGIDMAAFRFPAVSSFKGPNVAADQPVTSDVGRDPEVPMMLVLKELTSSVE
DIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHTMET
CVYPTNRNIENGTHYTGEPGHTYYGEEMTDGSTVSYDPPAASRVEHADYASQLTFLRLLS
SKAKQQVTFFCRNMVAYYDASADNKAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRP
TQWDRTEIEFETRLVGRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,278
>Cisavi.CG.ENS81.R131.263992-288199.05612.t
GGCGGATGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTATTCAAGCCGACCAAG
TGCGAGGTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTCATCCTTTGTGAAGTG
CTAACCTGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAAGTCTGTGGCGACGGA
CCAGTATTTTGCTTCCAGGGGGTCCCAGGATCACAAGGACTTGATGGAGCACCTGGACCC
AGAGGACCAAAAGGAGAACGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGA
AACCCCGGACCTCCAGGACCACCTGGACCAGGAATGGACAGCGTAAGTGGCTATAATGGA
CTGGCCAACAGCTATTCATCTGGAAACAAGGGACCAAGTGGAGGCGCTATGGGACCTAGA
GGACAACCAGGTGTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGACCACCTGGCGAA
CCCGGCGAAGCTGGACCCAGTGGACCACCCGGACACATGGGGCCAGCAGGCATCCCAGGA
AAGGACGGAAAAGACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCTATCGGTTCTCAT
GGCCCACAGGGGCCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGTGCCAAGGGCCAC
AAAGGTCACGCTGGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCTGGAGCTGATGGC
GAATCAGGAGCTGTAGGAGAAGCTGGACCCCCAGGAATTACCGGGCCACGAGGTTTGCCC
GGCGACCGTGGTCGCTCTGGACCTGCTGGCGAACCTGGTGCAAGAGGTTCCGATGGTCTA
CCTGGACAATCTGGCCCACCGGGACCAACTGGTAACTCTGGACCACCAGGCTTCCCAGGT
TCACCAGGATCTAAGGGTGAAGGAGGACCGACCGGTGCCAGAGGACCCGAGGGACCACAG
GGTTCCAGAGGCGAAGCCGGCACACCTGGCTCATCTGGCCCTGCTGGATTACCTGGCTCA
CCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTCAACTGGAGCCTCCGGTATTGCTGGA
CTTCCAGGTATTCCAGGCCCAAGAGGATCACCTGGCCCGCAAGGAAACATTGGTTCTTCT
GGACCCAAAGGAAACACTGGAAACCCTGGAGTACAAGGTTTCAGAGGTGACCAGGGACCA
AAAGGAAGCCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAAGGAGAAGAGGGC
AAAAGGGGAAGCCGTGGCGAGTCTGGACCCCCAGGGCAAATGGGATCTCAGGGAGAGAGG
GGTCAACCCGGAAACCGTGGATTCCCGGGGCAAGACGGGAGCTCAGGTCCCAAGGGAGCT
AGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTTGGAGATGTGGGA
AGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAACCAGGTTCGGAT
GGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGACGACCAGGACCA
TCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCTGGATCAAAGGGA
GTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCACCTGGATCACGT
GGTCTCGCCGGTAAAGACGGTGAAATTGGACCAGCGGGACAACCAGGACCTTCTGGAGTT
GCAGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAAGGTCTTCCAGGT
CCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTGCCTGGAGAAGTT
GGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGTGAGGCTGGTTCA
ACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCTGGATCCGATGGA
CAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCACAAGGCGTCCAA
GGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGCGAACGAGGTGAT
TCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGGGGCTTAACTGGA
CCTCTTGGGCCACCTGGAGCGCAAGGACCTAATGGAGAGAAGGGAGACGGCGGCAACGTT
GGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAGAGAGGGGAACCAGGACCT
GATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGTCAACCTGGAAAGAAGGGC
GACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCTGGGCTACAAGGACCTGCC
GGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGAGGAGCTCGAGGGGCA
CTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGACGACCTGGCGCTCCAGGA
GATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCAGGAAAACCAGGATCCAAA
GGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCATTCGGATTGCCCGGTCAG
CCTGGCGAGCCCGGACCTAGCGGTGAACCTGGTGCACCGGGAGGCCCTGGTGCTTCTGGA
CTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGTCTACCTGGACCGTCTGGATCACCT
GGTGAGAGAGGACCAGCTGGATTGCAGGGTTTTGGAAATTATGTGGGTGAAGAGGGCAAA
CAAGGTCGATCAGGTCTTCCCGGCGATCGTGGTCCTCCAGGCGACATCGGCCCTGTAGGA
CCTGCTGGCCCATCTGGCGATTCTGGACCCGAGGGCATGCCTGGACCTGAAGGCGCACCT
GGCCGCGACGGATCCACTGGAGTTAAGGGTGAAATTGGTGAAAGAGGCCACACTGGGCCA
CCCGGACAAGCGGGCATGCCTGGCCCACCTGGCCTACATGGCATTGAAGGAAAGAGTGGC
CCACGCGGCGAACCAGGTCCATCAGGTTCGCAAGGCGCACCAGGCCCTGAAGGTGGTCGA
GGCGTACCTGGTCCACAAGGTAGTCGAGGTGACACTGGTAAAACTGGAGATGCTGGACCA
AGGGGTAGCAAGGGACACCGTGGTTACAGCGGTCTACAAGGTCTCCCAGGGAAAACGGCA
ATTCAAGGTGATGCAGGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGGAGCAACA
GGACTCCGAGGTCCAGCCGGCAATGACGGCTCACCTGGCTCACCTGGCCCCATTGGGCCC
ACAGGTCCACGTGGTCAATCTGGTGAAGATGGTATGCGGGGACCCACTGGGCGCGAGGGA
CCACCTGGTCCACCAGGGCCTCCAGGGCCTGGCATAGACATGGCAGCCTTCCGATTCCCA
GCTGTGAGTTCATTCAAGGGACCAAATGTGGCAGCTGACCAGCCAGTGACCAGTGATGTT
GGACGTGATCCAGAGGTACCGATGATGTTGGTCTTGAAAGAGCTGACCAGCTCAGTGGAA
GACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGCTTGGACATC
TATTTGGCTGAACAACAGCAGGGAACTGTACCCAAGAGCGGTGTCCGATGGATCGATCCG
AACGGCGGCTGCAACGCTGACGGACTCGAGGTTTACTGCAACTTCCACACAATGGAGACT
TGCGTCTACCCGACCAACCGCAACATAGAGAACGGCACCCACTACACCGGCGAGCCTGGA
CATACCTACTACGGCGAAGAGATGACCGACGGTTCAACGGTGTCATACGATCCTCCTGCG
GCAAGCAGAGTTGAGCACGCAGACTACGCCTCGCAGCTCACGTTCCTGCGGTTGCTCAGT
AGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGCCGCAACATGGTGGCTTACTACGATGCT
TCGGCCGACAACAAGGCGCAAGCGCTGAAACTCCGTGGCTTCGGAGACGCCGAGTTCACC
GCTGAGGGCGCTGTCGGCACCACCTACAGAGTGTTGCACGATGGATGCTCTACCCGGCCG
ACGCAATGGGACCGAACCGAGATCGAGTTCGAGACCCGCCTGGTCGGAAGAATGCCGATC
ACGGACATCGCTCCGTTCGACATCGGTGACGCGGATCAGCAGTTCGGCGCCAAGTTCGGC
CCAGTCTGCTTCAAATAA
| ProSiteProfiles |
VWF_dom (IPR001007) - T[1-58] 11.281 |
| Pfam |
VWF_dom (IPR001007) - T[3-57] 2.1E-10 |
| SMART |
VWF_dom (IPR001007) - T[3-57] 4.3E-12 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[21-57] . |
| Pfam |
Collagen (IPR008160) - T[67-110] 3.5E-7 - T[135-189] 1.7E-7 - T[417-470] 2.0E-7 - T[831-888] 6.7E-7 - T[873-930] 1.5E-7 - T[936-991] 2.7E-8 - T[990-1045] 1.7E-6 - T[1092-1150] 7.1E-8 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1184-1425] 72.003 |
| SMART |
Fib_collagen_C (IPR000885) - T[1185-1425] 1.6E-82 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1188-1424] 8.5E-84 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1313-1424] 6.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 52.385 % | 696 | 0 |
| CO2A1_HUMAN | 63.904 % | 546 | 4.85E-169 |
| CO1A1_HUMAN | 55.495 % | 613 | 0 |