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- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05611.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,301 / 287,770]
Amino acid sequence
Length: 1,410
>Cisavi.CG.ENS81.R131.263992-288199.05611.p
GGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCKVCGD
GPGTSGRDGNPGVPGNPGPPGPPGPGMDSVSVCLCEQKVKHFSFLKGLANSYSSGNKGPS
GVIAGQPGAMGPRGQPGVSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPAGIPGKDGKDGK
DGRPGKTGPIGSHGPQGPRGFAGTPGLPGAKGHKGHAGLNGLKGESGLPGADGESGAVGE
AGPPGITGPRGLPGDRGRSGPAGEPGARGSDGLPGQSGPPGPTGNSGPPGFPGSPGSKGE
GGPTGARGPEGPQGSRGEAGTPGSSGPAGLPGSPGIDGASGAKGSTGASGIAGLPGIPGP
RGSPGPQGNIGSSGPKGNTGNPGVQGFRGDQGPKGSQGSTGPQGLQGVQGEEGKRGSRGE
SGPPGQMGSQGERGQPGNRGFPGQDGSSGPKGASGRRGKPGLSGPKGSVGDVGRSGEPGL
PGPRGLTGKPGSDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFPGSKGVGGEPGK
SGEKGIAGPPGSRGLAGKDGEIGPAGQPGPSGVAGDRGEAGQPGPPGFQGLPGPPGPNGE
PGKAGETGVPGEVGPSGEAGPRGERGFPGEAGSTGPQGLTGPRGAAGIPGSDGQKGQVGP
LGPPGEAGPQGVQGTTGRRGPAGLSGSKGERGDSGPPGLEGEPGKEGLRGLTGPLGPPGA
QGPNGEKGDGGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEGQPGKKGDSGSRGV
KGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAGRPGAPGDQGASGQ
QGNPGEPGKPGSKGASGDEGPPGPQGAFGLPGQPGEPGPSGEPGAPGGPGASGLRGNPGS
SGNPGLPGPSGSPGERGPAGLQGEEGKQGRSGLPGDRGPPGDIGPVGPAGPSGDSGPEGM
PGPEGAPGRDGSTGGEIGERGHTGPPGQAGMPGPPGLHGIEGKSGPRGEPGPSGSQGAPG
PEGGRGVPGPQGSRGDTGKTGDAGPRGSKGHRGYSGLQGLPGKTAIQGDAGQPGAAGPQG
LRGATGLRGPAGNDGSPGSPGPIGPTGPRGQSGEDGMRGPTGREGPPGPPGPPGPGIDMA
AFRFPAVSSFKGPNVAADQPVTSDVGRDPEVPMMLVLKELTSSVEDIKAPRGVSRKTPAR
SCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHTMETCVYPTNRNIENGTHY
TGEPGHTYYGEEMTDGSTVSYDPPAASRVEHADYASQLTFLRLLSSKAKQQVTFFCRNMV
AYYDASADNKAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRPTQWDRTEIEFETRLV
GRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,233
>Cisavi.CG.ENS81.R131.263992-288199.05611.t
GGCGGCGGATGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTATTCAAGCCGACC
AAGTGCGAGGTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTCATCCTTTGTGAA
GTGCTAACCTGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAAGTCTGTGGCGAC
GGACCAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCA
GGACCACCTGGACCAGGAATGGACAGCGTATCTGTATGTCTGTGTGAACAAAAAGTAAAA
CATTTCTCATTTTTAAAGGGACTGGCCAACAGCTATTCATCTGGAAACAAGGGACCAAGT
GGAGTCATCGCAGGCCAGCCTGGCGCTATGGGACCTAGAGGACAACCAGGTGTTTCTGGA
TCACCCGGACCGCAAGGATTTCAAGGACCACCTGGCGAACCCGGCGAAGCTGGACCCAGT
GGACCACCCGGACACATGGGGCCAGCAGGCATCCCAGGAAAGGACGGAAAAGACGGCAAA
GATGGGCGCCCCGGAAAAACAGGACCTATCGGTTCTCATGGCCCACAGGGGCCAAGAGGA
TTTGCCGGCACCCCTGGTCTTCCTGGTGCCAAGGGCCACAAAGGTCACGCTGGTCTTAAT
GGCTTGAAGGGAGAGAGCGGTTTACCTGGAGCTGATGGCGAATCAGGAGCTGTAGGAGAA
GCTGGACCCCCAGGAATTACCGGGCCACGAGGTTTGCCCGGCGACCGTGGTCGCTCTGGA
CCTGCTGGCGAACCTGGTGCAAGAGGTTCCGATGGTCTACCTGGACAATCTGGCCCACCG
GGACCAACTGGTAACTCTGGACCACCAGGCTTCCCAGGTTCACCAGGATCTAAGGGTGAA
GGAGGACCGACCGGTGCCAGAGGACCCGAGGGACCACAGGGTTCCAGAGGCGAAGCCGGC
ACACCTGGCTCATCTGGCCCTGCTGGATTACCTGGCTCACCTGGTATAGATGGTGCATCT
GGTGCCAAGGGTTCAACTGGAGCCTCCGGTATTGCTGGACTTCCAGGTATTCCAGGCCCA
AGAGGATCACCTGGCCCGCAAGGAAACATTGGTTCTTCTGGACCCAAAGGAAACACTGGA
AACCCTGGAGTACAAGGTTTCAGAGGTGACCAGGGACCAAAAGGAAGCCAGGGAAGCACT
GGACCACAGGGTCTCCAAGGTGTCCAAGGAGAAGAGGGCAAAAGGGGAAGCCGTGGCGAG
TCTGGACCCCCAGGGCAAATGGGATCTCAGGGAGAGAGGGGTCAACCCGGAAACCGTGGA
TTCCCGGGGCAAGACGGGAGCTCAGGTCCCAAGGGAGCTAGTGGTCGTAGGGGAAAACCC
GGCCTCAGTGGCCCCAAGGGTTCGGTTGGAGATGTGGGAAGATCGGGTGAACCTGGCCTA
CCTGGACCAAGGGGTCTCACGGGAAAACCAGGTTCGGATGGTCGACAAGGCAAGCAAGGT
CCATCAGGTCCTGCTGGCGAAGATGGACGACCAGGACCATCCGGCGCAACTGGGCAAAAG
GGTCCACCTGGCCAGATTGGTTTCCCTGGATCAAAGGGAGTTGGTGGTGAACCAGGTAAA
TCAGGAGAGAAAGGTATTGCTGGACCACCTGGATCACGTGGTCTCGCCGGTAAAGACGGT
GAAATTGGACCAGCGGGACAACCAGGACCTTCTGGAGTTGCAGGAGACAGAGGAGAGGCT
GGTCAACCAGGTCCGCCCGGATTCCAAGGTCTTCCAGGTCCTCCAGGACCCAACGGAGAG
CCAGGAAAGGCTGGGGAAACTGGTGTGCCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGA
CCAAGAGGTGAACGGGGATTCCCCGGTGAGGCTGGTTCAACTGGACCCCAAGGTCTCACT
GGGCCACGCGGCGCTGCCGGCATCCCTGGATCCGATGGACAGAAGGGCCAAGTCGGTCCT
CTCGGGCCACCTGGCGAAGCAGGCCCACAAGGCGTCCAAGGTACAACTGGTCGACGTGGA
CCCGCTGGGTTATCTGGATCGAAGGGCGAACGAGGTGATTCTGGACCACCTGGTTTGGAG
GGTGAACCTGGAAAAGAGGGTCTTAGGGGCTTAACTGGACCTCTTGGGCCACCTGGAGCG
CAAGGACCTAATGGAGAGAAGGGAGACGGCGGCAACGTTGGACCCGAAGGTGCTACTGGA
CCCAGAGGATCACCTGGTGAGAGAGGGGAACCAGGACCTGATGGACCACCAGGATACCCA
GGATCTCCGGGTTCCGAGGGTCAACCTGGAAAGAAGGGCGACTCCGGCTCACGAGGTGTC
AAGGGAGACTCCGGTGCACCTGGGCTACAAGGACCTGCCGGAGGTGCCGGACCACTTGGT
CCTCCTGGTGTCGCTGGGCGCAGAGGAGCTCGAGGGGCACTTGGTGCACCGGGACCTGCA
GGATTCCCAGGACCAGCTGGACGACCTGGCGCTCCAGGAGATCAGGGAGCTTCAGGACAG
CAAGGTAACCCAGGAGAACCAGGAAAACCAGGATCCAAAGGAGCAAGTGGTGATGAAGGA
CCACCTGGACCACAAGGAGCATTCGGATTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGC
GGTGAACCTGGTGCACCGGGAGGCCCTGGTGCTTCTGGACTCAGAGGAAACCCTGGATCA
TCTGGAAACCCTGGTCTACCTGGACCGTCTGGATCACCTGGTGAGAGAGGACCAGCTGGA
TTGCAGGGTGAAGAGGGCAAACAAGGTCGATCAGGTCTTCCCGGCGATCGTGGTCCTCCA
GGCGACATCGGCCCTGTAGGACCTGCTGGCCCATCTGGCGATTCTGGACCCGAGGGCATG
CCTGGACCTGAAGGCGCACCTGGCCGCGACGGATCCACTGGAGGTGAAATTGGTGAAAGA
GGCCACACTGGGCCACCCGGACAAGCGGGCATGCCTGGCCCACCTGGCCTACATGGCATT
GAAGGAAAGAGTGGCCCACGCGGCGAACCAGGTCCATCAGGTTCGCAAGGCGCACCAGGC
CCTGAAGGTGGTCGAGGCGTACCTGGTCCACAAGGTAGTCGAGGTGACACTGGTAAAACT
GGAGATGCTGGACCAAGGGGTAGCAAGGGACACCGTGGTTACAGCGGTCTACAAGGTCTC
CCAGGGAAAACGGCAATTCAAGGTGATGCAGGGCAACCTGGTGCAGCTGGTCCACAAGGT
CTTCGAGGAGCAACAGGACTCCGAGGTCCAGCCGGCAATGACGGCTCACCTGGCTCACCT
GGCCCCATTGGGCCCACAGGTCCACGTGGTCAATCTGGTGAAGATGGTATGCGGGGACCC
ACTGGGCGCGAGGGACCACCTGGTCCACCAGGGCCTCCAGGGCCTGGCATAGACATGGCA
GCCTTCCGATTCCCAGCTGTGAGTTCATTCAAGGGACCAAATGTGGCAGCTGACCAGCCA
GTGACCAGTGATGTTGGACGTGATCCAGAGGTACCGATGATGTTGGTCTTGAAAGAGCTG
ACCAGCTCAGTGGAAGACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACGCCAGCTCGG
TCGTGCTTGGACATCTATTTGGCTGAACAACAGCAGGGAACTGTACCCAAGAGCGGTGTC
CGATGGATCGATCCGAACGGCGGCTGCAACGCTGACGGACTCGAGGTTTACTGCAACTTC
CACACAATGGAGACTTGCGTCTACCCGACCAACCGCAACATAGAGAACGGCACCCACTAC
ACCGGCGAGCCTGGACATACCTACTACGGCGAAGAGATGACCGACGGTTCAACGGTGTCA
TACGATCCTCCTGCGGCAAGCAGAGTTGAGCACGCAGACTACGCCTCGCAGCTCACGTTC
CTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGCCGCAACATGGTG
GCTTACTACGATGCTTCGGCCGACAACAAGGCGCAAGCGCTGAAACTCCGTGGCTTCGGA
GACGCCGAGTTCACCGCTGAGGGCGCTGTCGGCACCACCTACAGAGTGTTGCACGATGGA
TGCTCTACCCGGCCGACGCAATGGGACCGAACCGAGATCGAGTTCGAGACCCGCCTGGTC
GGAAGAATGCCGATCACGGACATCGCTCCGTTCGACATCGGTGACGCGGATCAGCAGTTC
GGCGCCAAGTTCGGCCCAGTCTGCTTCAAATAA
| ProSiteProfiles |
VWF_dom (IPR001007) - T[2-59] 11.281 |
| SMART |
VWF_dom (IPR001007) - T[4-58] 4.3E-12 |
| Pfam |
VWF_dom (IPR001007) - T[4-58] 2.1E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[22-58] . |
| Pfam |
Collagen (IPR008160) - T[125-181] 6.4E-8 - T[362-420] 3.1E-7 - T[1077-1135] 7.0E-8 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1169-1410] 72.003 |
| SMART |
Fib_collagen_C (IPR000885) - T[1170-1410] 1.6E-82 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1173-1409] 8.3E-84 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1298-1409] 6.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 51.716 % | 694 | 0 |
| CO2A1_HUMAN | 62.203 % | 539 | 1.0E-166 |
| CO1A1_HUMAN | 54.821 % | 613 | 0 |