- EST 'BW407360' >
- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05610.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,289 / 287,770]
Amino acid sequence
Length: 1,433
>Cisavi.CG.ENS81.R131.263992-288199.05610.p
DVDLGGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCK
VCGDGPGEFITMKIEAAPKGQKGEPGIIPDSIVSTSGRDGNPGVPGNPGPPGPPGPGMDS
VIKHFSFLKGLANSYSSGNKGPSGVIAGQPGAMGPRGQPGVSGSPGPQGFQGPPGEPGEA
GPSGPPGHMGPAGIPGKDGKDGKDGRPGKTGPIGSHGPQGPRGFAGTPGLPGAKGHKGHA
GLNGLKGESGLPGADGESGAVGEAGPPGITGPRGLPGDRGRSGPAGEPGARGSDGLPGQS
GPPGPTGNSGPPGFPGSPGSKGEGGPTGARGPEGPQGSRGEAGTPGSSGPAGLPGSPGID
GASGAKGSTGASGIAGLPGIPGPRGSPGPQGNIGSSGPKGNTGNPGVQGFRGDQGPKGSQ
GSTGPQGLQGVQGEEGKRGSRGESGPPGQMGSQGERGQPGNRGFPGQDGSSGPKGASGRR
GKPGLSGPKGSVGDVGRSGEPGLPGPRGLTGKPGSDGRQGKQGPSGPAGEDGRPGPSGAT
GQKGPPGQIGFPGSKGVGGEPGKSGEKGIAGPPGSRGLAGKDGEIGPAGQPGPSGVAGDR
GEAGQPGPPGFQGLPGPPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFPGEAGSTGPQ
GLTGPRGAAGIPGSDGQKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSKGERGDSGPP
GLEGEPGKEGLRGLTGPLGPPGAQGPNGEKGDGGNVGPEGATGPRGSPGERGEPGPDGPP
GYPGSPGSEGQPGKKGDSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAP
GPAGFPGPAGRPGAPGDQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAFGLQGLPGQP
GEPGPSGEPGAPGGPGASGLRGNPGSSGNPGLPGPSGSPGERGPAGLQGKQGRSGLPGDR
GPPGDIGPVGPAGPSGDSGPEGMPGPEGAPGRDGSTGVKGEIGERGHTGPPGQAGMPGPP
GLHGIEGKSGPRGEPGPSGSQGAPGPEGGRGVPGPQGSRGDTGKTGDAGPRGSKGHRGYS
GLQGLPGKTAIQGDAGQPGAAGPQGLRGATGLRGPAGNDGSPGSPGPIGPTGPRGQSGED
GMRGPTGREGPPGPPGPPGPGIDMAAFRFPAVSSFKGPNVAADQPVTSDVGRDPEMMLVL
KELTSSVEDIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVY
CNFHTMETCVYPTNRNIENGTHYTGEPGHTYYGEEMTDGSTVSYDPPAASRVEHADYASQ
LTFLRLLSSKAKQQVTFFCRNMVAYYDASADNKAQALKLRGFGDAEFTAEGAVGTTYRVL
HDGCSTRPTQWDRTEIEFETRLVGRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,302
>Cisavi.CG.ENS81.R131.263992-288199.05610.t
GATGTAGACTTGGGCGGCGGATGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTA
TTCAAGCCGACCAAGTGCGAGGTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTC
ATCCTTTGTGAAGTGCTAACCTGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAA
GTCTGTGGCGACGGACCAGGTGAGTTCATTACCATGAAGATTGAGGCTGCACCTAAAGGA
CAAAAAGGAGAACCTGGAATAATACCGGACTCTATTGTAAGTACATCAGGCAGAGATGGA
AACCCTGGCGTCCCAGGAAACCCCGGACCTCCAGGACCACCTGGACCAGGAATGGACAGC
GTAATAAAACATTTCTCATTTTTAAAGGGACTGGCCAACAGCTATTCATCTGGAAACAAG
GGACCAAGTGGAGTCATCGCAGGCCAGCCTGGCGCTATGGGACCTAGAGGACAACCAGGT
GTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGACCACCTGGCGAACCCGGCGAAGCT
GGACCCAGTGGACCACCCGGACACATGGGGCCAGCAGGCATCCCAGGAAAGGACGGAAAA
GACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCTATCGGTTCTCATGGCCCACAGGGG
CCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGTGCCAAGGGCCACAAAGGTCACGCT
GGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCTGGAGCTGATGGCGAATCAGGAGCT
GTAGGAGAAGCTGGACCCCCAGGAATTACCGGGCCACGAGGTTTGCCCGGCGACCGTGGT
CGCTCTGGACCTGCTGGCGAACCTGGTGCAAGAGGTTCCGATGGTCTACCTGGACAATCT
GGCCCACCGGGACCAACTGGTAACTCTGGACCACCAGGCTTCCCAGGTTCACCAGGATCT
AAGGGTGAAGGAGGACCGACCGGTGCCAGAGGACCCGAGGGACCACAGGGTTCCAGAGGC
GAAGCCGGCACACCTGGCTCATCTGGCCCTGCTGGATTACCTGGCTCACCTGGTATAGAT
GGTGCATCTGGTGCCAAGGGTTCAACTGGAGCCTCCGGTATTGCTGGACTTCCAGGTATT
CCAGGCCCAAGAGGATCACCTGGCCCGCAAGGAAACATTGGTTCTTCTGGACCCAAAGGA
AACACTGGAAACCCTGGAGTACAAGGTTTCAGAGGTGACCAGGGACCAAAAGGAAGCCAG
GGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAAGGAGAAGAGGGCAAAAGGGGAAGC
CGTGGCGAGTCTGGACCCCCAGGGCAAATGGGATCTCAGGGAGAGAGGGGTCAACCCGGA
AACCGTGGATTCCCGGGGCAAGACGGGAGCTCAGGTCCCAAGGGAGCTAGTGGTCGTAGG
GGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTTGGAGATGTGGGAAGATCGGGTGAA
CCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAACCAGGTTCGGATGGTCGACAAGGC
AAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGACGACCAGGACCATCCGGCGCAACT
GGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCTGGATCAAAGGGAGTTGGTGGTGAA
CCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCACCTGGATCACGTGGTCTCGCCGGT
AAAGACGGTGAAATTGGACCAGCGGGACAACCAGGACCTTCTGGAGTTGCAGGAGACAGA
GGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAAGGTCTTCCAGGTCCTCCAGGACCC
AACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTGCCTGGAGAAGTTGGTCCGTCTGGT
GAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGTGAGGCTGGTTCAACTGGACCCCAA
GGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCTGGATCCGATGGACAGAAGGGCCAA
GTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCACAAGGCGTCCAAGGTACAACTGGT
CGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGCGAACGAGGTGATTCTGGACCACCT
GGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGGGGCTTAACTGGACCTCTTGGGCCA
CCTGGAGCGCAAGGACCTAATGGAGAGAAGGGAGACGGCGGCAACGTTGGACCCGAAGGT
GCTACTGGACCCAGAGGATCACCTGGTGAGAGAGGGGAACCAGGACCTGATGGACCACCA
GGATACCCAGGATCTCCGGGTTCCGAGGGTCAACCTGGAAAGAAGGGCGACTCCGGCTCA
CGAGGTGTCAAGGGAGACTCCGGTGCACCTGGGCTACAAGGACCTGCCGGAGGTGCCGGA
CCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGAGGAGCTCGAGGGGCACTTGGTGCACCG
GGACCTGCAGGATTCCCAGGACCAGCTGGACGACCTGGCGCTCCAGGAGATCAGGGAGCT
TCAGGACAGCAAGGTAACCCAGGAGAACCAGGAAAACCAGGATCCAAAGGAGCAAGTGGT
GATGAAGGACCACCTGGACCACAAGGAGCATTCGGTCTACAAGGATTGCCCGGTCAGCCT
GGCGAGCCCGGACCTAGCGGTGAACCTGGTGCACCGGGAGGCCCTGGTGCTTCTGGACTC
AGAGGAAACCCTGGATCATCTGGAAACCCTGGTCTACCTGGACCGTCTGGATCACCTGGT
GAGAGAGGACCAGCTGGATTGCAGGGCAAACAAGGTCGATCAGGTCTTCCCGGCGATCGT
GGTCCTCCAGGCGACATCGGCCCTGTAGGACCTGCTGGCCCATCTGGCGATTCTGGACCC
GAGGGCATGCCTGGACCTGAAGGCGCACCTGGCCGCGACGGATCCACTGGAGTTAAGGGT
GAAATTGGTGAAAGAGGCCACACTGGGCCACCCGGACAAGCGGGCATGCCTGGCCCACCT
GGCCTACATGGCATTGAAGGAAAGAGTGGCCCACGCGGCGAACCAGGTCCATCAGGTTCG
CAAGGCGCACCAGGCCCTGAAGGTGGTCGAGGCGTACCTGGTCCACAAGGTAGTCGAGGT
GACACTGGTAAAACTGGAGATGCTGGACCAAGGGGTAGCAAGGGACACCGTGGTTACAGC
GGTCTACAAGGTCTCCCAGGGAAAACGGCAATTCAAGGTGATGCAGGGCAACCTGGTGCA
GCTGGTCCACAAGGTCTTCGAGGAGCAACAGGACTCCGAGGTCCAGCCGGCAATGACGGC
TCACCTGGCTCACCTGGCCCCATTGGGCCCACAGGTCCACGTGGTCAATCTGGTGAAGAT
GGTATGCGGGGACCCACTGGGCGCGAGGGACCACCTGGTCCACCAGGGCCTCCAGGGCCT
GGCATAGACATGGCAGCCTTCCGATTCCCAGCTGTGAGTTCATTCAAGGGACCAAATGTG
GCAGCTGACCAGCCAGTGACCAGTGATGTTGGACGTGATCCAGAGATGATGTTGGTCTTG
AAAGAGCTGACCAGCTCAGTGGAAGACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACG
CCAGCTCGGTCGTGCTTGGACATCTATTTGGCTGAACAACAGCAGGGAACTGTACCCAAG
AGCGGTGTCCGATGGATCGATCCGAACGGCGGCTGCAACGCTGACGGACTCGAGGTTTAC
TGCAACTTCCACACAATGGAGACTTGCGTCTACCCGACCAACCGCAACATAGAGAACGGC
ACCCACTACACCGGCGAGCCTGGACATACCTACTACGGCGAAGAGATGACCGACGGTTCA
ACGGTGTCATACGATCCTCCTGCGGCAAGCAGAGTTGAGCACGCAGACTACGCCTCGCAG
CTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGCCGC
AACATGGTGGCTTACTACGATGCTTCGGCCGACAACAAGGCGCAAGCGCTGAAACTCCGT
GGCTTCGGAGACGCCGAGTTCACCGCTGAGGGCGCTGTCGGCACCACCTACAGAGTGTTG
CACGATGGATGCTCTACCCGGCCGACGCAATGGGACCGAACCGAGATCGAGTTCGAGACC
CGCCTGGTCGGAAGAATGCCGATCACGGACATCGCTCCGTTCGACATCGGTGACGCGGAT
CAGCAGTTCGGCGCCAAGTTCGGCCCAGTCTGCTTCAAATAA
| ProSiteProfiles |
VWF_dom (IPR001007) - T[6-63] 11.281 |
| SMART |
VWF_dom (IPR001007) - T[8-62] 4.3E-12 |
| Pfam |
VWF_dom (IPR001007) - T[8-62] 2.1E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[26-62] . |
| SMART |
Fib_collagen_C (IPR000885) - T[1193-1433] 4.8E-85 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1193-1432] 1.8E-84 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1194-1433] 72.861 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1321-1432] 5.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 52.228 % | 704 | 0 |
| CO2A1_HUMAN | 59.209 % | 613 | 0 |
| CO1A1_HUMAN | 55.609 % | 619 | 0 |