- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05609.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,289 / 287,770]
Amino acid sequence
Length: 1,461
>Cisavi.CG.ENS81.R131.263992-288199.05609.p
DVDLGGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCK
VCGDGPGEFITMKIEAAPKGQKGEPGIIPDSIGEGPPGSQGLPVRSQGLDGAPGPRGPKG
ERGTSGRDGNPGVPGNPGPPGPPGPGMDSVSGYNVHRATVGHHEQECTPKRGMTSGCVGA
MGPRGQPGVSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPAGIPGKDGKDGKDGRPGKTGP
IGSHGPQGPRGFAGTPGLPGAKGHKGHAGLNGLKGESGLPGADGESGAVGEAGPPGITGP
RGLPGDRGRSGPAGEPGARGSDGLPGQSGPPGPTGNSGPPGFPGSPGSKGEGGPTGARGP
EGPQGSRGEAGTPGSSGPAGLPGSPGIDGASGAKGSTGASGIAGLPGIPGPRGSPGPQGN
IGSSGPKGNTGNPGVQGFRGDQGPKGSQGSTGPQGLQGVQGEEGKRGSRGESGPPGQMGS
QGERGQPGNRGFPGQDGSSGPKGASGRRGKPGLSGPKGSVGDVGRSGEPGLPGPRGLTGK
PGSDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFPGSKGVGGEPGKSGEKGIAGP
PGSRGLAGKDGEIGPAGQPGPSGVAGDRGEAGQPGPPGFQGLPGPPGPNGEPGKAGETGV
PGEVGPSGEAGPRGERGFPGEAGSTGPQGLTGPRGAAGIPGSDGQKGQVGPLGPPGEAGP
QGVQGTTGRRGPAGLSGSKGERGDSGPPGLEGEPGKEGLRGLTGPLGPPGAQGPNGEKGD
GGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEGQPGKKGDSGSRGVKGDSGAPGL
QGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAGRPGAPGDQGASGQQGNPGEPGK
PGSKGASGDEGPPGPQGAFGLQGLPGQPGEPGPSGEPGAPGGPGASGLRGNPGSSGNPGL
PGPSGSPGERGPAGLQGKQGRSGLPGDRGPPGDIGPVGPAGPSGDSGPEGMPGPEGAPGR
DGSTGVKGEIGERGHTGPPGQAGMPGPPGLHGIEGKSGPRGEPGPSGSQGAPGPEGGRGV
PGPQGSRGDTGKTGDAGPRGSKGHRGYSGLQGLPGKTAIQGDAGQPGAAGPQGLRGATGL
RGPAGNDGSPGSPGPIGPTGPRGQSGEDGMRGPTGREGPPGPPGPPGPGIDMAAFRFPAV
SSFKGPNVAADQPVTSDVGRDPEMMLVLKELTSSVEDIKAPRGVSRKTPARSCLDIYLAE
QQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHTMETCVYPTNRNIENGTHYTGEPGHTYY
GEEMTDGSTVSYDPPAASRVEHADYASQLTFLRLLSSKAKQQVTFFCRNMVAYYDASADN
KAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRPTQWDRTEIEFETRLVGRMPITDIA
PFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,386
>Cisavi.CG.ENS81.R131.263992-288199.05609.t
GATGTAGACTTGGGCGGCGGATGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTA
TTCAAGCCGACCAAGTGCGAGGTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTC
ATCCTTTGTGAAGTGCTAACCTGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAA
GTCTGTGGCGACGGACCAGGTGAGTTCATTACCATGAAGATTGAGGCTGCACCTAAAGGA
CAAAAAGGAGAACCTGGAATAATACCGGACTCTATTGGAGAAGGACCACCTGGATCTCAA
GGCTTACCAGTAAGATCACAAGGACTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGA
GAACGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCA
GGACCACCTGGACCAGGAATGGACAGCGTAAGTGGCTATAATGTTCATCGGGCCACGGTG
GGACATCATGAGCAGGAATGTACGCCTAAAAGGGGCATGACTAGTGGTTGTGTGGGCGCT
ATGGGACCTAGAGGACAACCAGGTGTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGA
CCACCTGGCGAACCCGGCGAAGCTGGACCCAGTGGACCACCCGGACACATGGGGCCAGCA
GGCATCCCAGGAAAGGACGGAAAAGACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCT
ATCGGTTCTCATGGCCCACAGGGGCCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGT
GCCAAGGGCCACAAAGGTCACGCTGGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCT
GGAGCTGATGGCGAATCAGGAGCTGTAGGAGAAGCTGGACCCCCAGGAATTACCGGGCCA
CGAGGTTTGCCCGGCGACCGTGGTCGCTCTGGACCTGCTGGCGAACCTGGTGCAAGAGGT
TCCGATGGTCTACCTGGACAATCTGGCCCACCGGGACCAACTGGTAACTCTGGACCACCA
GGCTTCCCAGGTTCACCAGGATCTAAGGGTGAAGGAGGACCGACCGGTGCCAGAGGACCC
GAGGGACCACAGGGTTCCAGAGGCGAAGCCGGCACACCTGGCTCATCTGGCCCTGCTGGA
TTACCTGGCTCACCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTCAACTGGAGCCTCC
GGTATTGCTGGACTTCCAGGTATTCCAGGCCCAAGAGGATCACCTGGCCCGCAAGGAAAC
ATTGGTTCTTCTGGACCCAAAGGAAACACTGGAAACCCTGGAGTACAAGGTTTCAGAGGT
GACCAGGGACCAAAAGGAAGCCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAA
GGAGAAGAGGGCAAAAGGGGAAGCCGTGGCGAGTCTGGACCCCCAGGGCAAATGGGATCT
CAGGGAGAGAGGGGTCAACCCGGAAACCGTGGATTCCCGGGGCAAGACGGGAGCTCAGGT
CCCAAGGGAGCTAGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTT
GGAGATGTGGGAAGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAA
CCAGGTTCGGATGGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGA
CGACCAGGACCATCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCT
GGATCAAAGGGAGTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCA
CCTGGATCACGTGGTCTCGCCGGTAAAGACGGTGAAATTGGACCAGCGGGACAACCAGGA
CCTTCTGGAGTTGCAGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAA
GGTCTTCCAGGTCCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTG
CCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGT
GAGGCTGGTTCAACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCT
GGATCCGATGGACAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCA
CAAGGCGTCCAAGGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGC
GAACGAGGTGATTCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGG
GGCTTAACTGGACCTCTTGGGCCACCTGGAGCGCAAGGACCTAATGGAGAGAAGGGAGAC
GGCGGCAACGTTGGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAGAGAGGG
GAACCAGGACCTGATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGTCAACCT
GGAAAGAAGGGCGACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCTGGGCTA
CAAGGACCTGCCGGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGAGGA
GCTCGAGGGGCACTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGACGACCT
GGCGCTCCAGGAGATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCAGGAAAA
CCAGGATCCAAAGGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCATTCGGT
CTACAAGGATTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGCGGTGAACCTGGTGCACCG
GGAGGCCCTGGTGCTTCTGGACTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGTCTA
CCTGGACCGTCTGGATCACCTGGTGAGAGAGGACCAGCTGGATTGCAGGGCAAACAAGGT
CGATCAGGTCTTCCCGGCGATCGTGGTCCTCCAGGCGACATCGGCCCTGTAGGACCTGCT
GGCCCATCTGGCGATTCTGGACCCGAGGGCATGCCTGGACCTGAAGGCGCACCTGGCCGC
GACGGATCCACTGGAGTTAAGGGTGAAATTGGTGAAAGAGGCCACACTGGGCCACCCGGA
CAAGCGGGCATGCCTGGCCCACCTGGCCTACATGGCATTGAAGGAAAGAGTGGCCCACGC
GGCGAACCAGGTCCATCAGGTTCGCAAGGCGCACCAGGCCCTGAAGGTGGTCGAGGCGTA
CCTGGTCCACAAGGTAGTCGAGGTGACACTGGTAAAACTGGAGATGCTGGACCAAGGGGT
AGCAAGGGACACCGTGGTTACAGCGGTCTACAAGGTCTCCCAGGGAAAACGGCAATTCAA
GGTGATGCAGGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGGAGCAACAGGACTC
CGAGGTCCAGCCGGCAATGACGGCTCACCTGGCTCACCTGGCCCCATTGGGCCCACAGGT
CCACGTGGTCAATCTGGTGAAGATGGTATGCGGGGACCCACTGGGCGCGAGGGACCACCT
GGTCCACCAGGGCCTCCAGGGCCTGGCATAGACATGGCAGCCTTCCGATTCCCAGCTGTG
AGTTCATTCAAGGGACCAAATGTGGCAGCTGACCAGCCAGTGACCAGTGATGTTGGACGT
GATCCAGAGATGATGTTGGTCTTGAAAGAGCTGACCAGCTCAGTGGAAGACATCAAAGCC
CCACGTGGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGCTTGGACATCTATTTGGCTGAA
CAACAGCAGGGAACTGTACCCAAGAGCGGTGTCCGATGGATCGATCCGAACGGCGGCTGC
AACGCTGACGGACTCGAGGTTTACTGCAACTTCCACACAATGGAGACTTGCGTCTACCCG
ACCAACCGCAACATAGAGAACGGCACCCACTACACCGGCGAGCCTGGACATACCTACTAC
GGCGAAGAGATGACCGACGGTTCAACGGTGTCATACGATCCTCCTGCGGCAAGCAGAGTT
GAGCACGCAGACTACGCCTCGCAGCTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCCAAG
CAGCAAGTGACGTTCTTCTGCCGCAACATGGTGGCTTACTACGATGCTTCGGCCGACAAC
AAGGCGCAAGCGCTGAAACTCCGTGGCTTCGGAGACGCCGAGTTCACCGCTGAGGGCGCT
GTCGGCACCACCTACAGAGTGTTGCACGATGGATGCTCTACCCGGCCGACGCAATGGGAC
CGAACCGAGATCGAGTTCGAGACCCGCCTGGTCGGAAGAATGCCGATCACGGACATCGCT
CCGTTCGACATCGGTGACGCGGATCAGCAGTTCGGCGCCAAGTTCGGCCCAGTCTGCTTC
AAATAA
| ProSiteProfiles |
VWF_dom (IPR001007) - T[6-63] 11.281 |
| SMART |
VWF_dom (IPR001007) - T[8-62] 4.3E-12 |
| Pfam |
VWF_dom (IPR001007) - T[8-62] 2.2E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[26-62] . |
| Pfam |
Collagen (IPR008160) - T[176-234] 3.0E-9 - T[233-286] 1.6E-7 - T[1130-1188] 7.9E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1221-1461] 4.8E-85 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1221-1460] 1.9E-84 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1222-1461] 72.861 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1349-1460] 6.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 52.228 % | 705 | 0 |
| CO2A1_HUMAN | 60.916 % | 620 | 0 |
| CO1A1_HUMAN | 55.609 % | 617 | 0 |