- Transcript 'Cisavi.CG.ENS81.R131...' >
- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Boleac.CG.SB_v3.S10....' >
- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05608.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,289 / 287,770]
Amino acid sequence
Length: 1,462
>Cisavi.CG.ENS81.R131.263992-288199.05608.p
DVDLGGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPFQISIEGQCCK
VCGDGPGEFITMKIEAAPKGQKGEPGIIPDSIGEGPPGSQGLPVRSQGLDGAPGPRGPKG
ERGTSGRDGNPGVPGNPGPPGPPGPGMDSVIKHFSFLKGLANSYSSGNKGPSGVIAGQPG
AMGPRGQPGVSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPAGIPGKDGKDGKDGRPGKTG
PIGSHGPQGPRGFAGTPGLPGAKGHKGHAGLNGLKGESGLPGADGESGAVGEAGPPGITG
PRGLPGDRGRSGPAGEPGARGSDGLPGQSGPPGPTGNSGPPGFPGSPGSKGEGGPTGARG
PEGPQGSRGEAGTPGSSGPAGLPGSPGIDGASGAKGSTGASGIAGLPGIPGPRGSPGPQG
NIGSSGPKGNTGNPGVQGFRGDQGPKGSQGSTGPQGLQGVQGEEGKRGSRGESGPPGQMG
SQGERGQPGNRGFPGQDGSSGPKGASGRRGKPGLSGPKGSVGDVGRSGEPGLPGPRGLTG
KPGSDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFPGSKGVGGEPGKSGEKGIAG
PPGSRGLAGKDGEIGPAGQPGPSGVAGDRGEAGQPGPPGFQGLPGPPGPNGEPGKAGETG
VPGEVGPSGEAGPRGERGFPGEAGSTGPQGLTGPRGAAGIPGSDGQKGQVGPLGPPGEAG
PQGVQGTTGRRGPAGLSGSKGERGDSGPPGLEGEPGKEGLRGLTGPLGPPGAQGPNGEKG
DGGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEGQPGKKGDSGSRGVKGDSGAPG
LQGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAGRPGAPGDQGASGQQGNPGEPG
KPGSKGASGDEGPPGPQGAFGLQGLPGQPGEPGPSGEPGAPGGPGASGLRGNPGSSGNPG
LPGPSGSPGERGPAGLQGKQGRSGLPGDRGPPGDIGPVGPAGPSGDSGPEGMPGPEGAPG
RDGSTGVKGEIGERGHTGPPGQAGMPGPPGLHGIEGKSGPRGEPGPSGSQGAPGPEGGRG
VPGPQGSRGDTGKTGDAGPRGSKGHRGYSGLQGLPGKTAIQGDAGQPGAAGPQGLRGATG
LRGPAGNDGSPGSPGPIGPTGPRGQSGEDGMRGPTGREGPPGPPGPPGPGIDMAAFRFPA
VSSFKGPNVAADQPVTSDVGRDPEMMLVLKELTSSVEDIKAPRGVSRKTPARSCLDIYLA
EQQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHTMETCVYPTNRNIENGTHYTGEPGHTY
YGEEMTDGSTVSYDPPAASRVEHADYASQLTFLRLLSSKAKQQVTFFCRNMVAYYDASAD
NKAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRPTQWDRTEIEFETRLVGRMPITDI
APFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,389
>Cisavi.CG.ENS81.R131.263992-288199.05608.t
GATGTAGACTTGGGCGGCGGATGCGTTTACAAAGGCGAGGTATACAACGCCGGCGACGTA
TTCAAGCCGACCAAGTGCGAGGTGTGCGTATGCGACGAACGTGAGGTCGTCTGCGACTTC
ATCCTTTGTGAAGTGCTAACCTGCCCTTTCCAAATAAGCATTGAGGGACAGTGCTGTAAA
GTCTGTGGCGACGGACCAGGTGAGTTCATTACCATGAAGATTGAGGCTGCACCTAAAGGA
CAAAAAGGAGAACCTGGAATAATACCGGACTCTATTGGAGAAGGACCACCTGGATCTCAA
GGCTTACCAGTAAGATCACAAGGACTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGA
GAACGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCA
GGACCACCTGGACCAGGAATGGACAGCGTAATAAAACATTTCTCATTTTTAAAGGGACTG
GCCAACAGCTATTCATCTGGAAACAAGGGACCAAGTGGAGTCATCGCAGGCCAGCCTGGC
GCTATGGGACCTAGAGGACAACCAGGTGTTTCTGGATCACCCGGACCGCAAGGATTTCAA
GGACCACCTGGCGAACCCGGCGAAGCTGGACCCAGTGGACCACCCGGACACATGGGGCCA
GCAGGCATCCCAGGAAAGGACGGAAAAGACGGCAAAGATGGGCGCCCCGGAAAAACAGGA
CCTATCGGTTCTCATGGCCCACAGGGGCCAAGAGGATTTGCCGGCACCCCTGGTCTTCCT
GGTGCCAAGGGCCACAAAGGTCACGCTGGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTA
CCTGGAGCTGATGGCGAATCAGGAGCTGTAGGAGAAGCTGGACCCCCAGGAATTACCGGG
CCACGAGGTTTGCCCGGCGACCGTGGTCGCTCTGGACCTGCTGGCGAACCTGGTGCAAGA
GGTTCCGATGGTCTACCTGGACAATCTGGCCCACCGGGACCAACTGGTAACTCTGGACCA
CCAGGCTTCCCAGGTTCACCAGGATCTAAGGGTGAAGGAGGACCGACCGGTGCCAGAGGA
CCCGAGGGACCACAGGGTTCCAGAGGCGAAGCCGGCACACCTGGCTCATCTGGCCCTGCT
GGATTACCTGGCTCACCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTCAACTGGAGCC
TCCGGTATTGCTGGACTTCCAGGTATTCCAGGCCCAAGAGGATCACCTGGCCCGCAAGGA
AACATTGGTTCTTCTGGACCCAAAGGAAACACTGGAAACCCTGGAGTACAAGGTTTCAGA
GGTGACCAGGGACCAAAAGGAAGCCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTC
CAAGGAGAAGAGGGCAAAAGGGGAAGCCGTGGCGAGTCTGGACCCCCAGGGCAAATGGGA
TCTCAGGGAGAGAGGGGTCAACCCGGAAACCGTGGATTCCCGGGGCAAGACGGGAGCTCA
GGTCCCAAGGGAGCTAGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCG
GTTGGAGATGTGGGAAGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGA
AAACCAGGTTCGGATGGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGAT
GGACGACCAGGACCATCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTC
CCTGGATCAAAGGGAGTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGA
CCACCTGGATCACGTGGTCTCGCCGGTAAAGACGGTGAAATTGGACCAGCGGGACAACCA
GGACCTTCTGGAGTTGCAGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTC
CAAGGTCTTCCAGGTCCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGT
GTGCCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCC
GGTGAGGCTGGTTCAACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATC
CCTGGATCCGATGGACAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGC
CCACAAGGCGTCCAAGGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAG
GGCGAACGAGGTGATTCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTT
AGGGGCTTAACTGGACCTCTTGGGCCACCTGGAGCGCAAGGACCTAATGGAGAGAAGGGA
GACGGCGGCAACGTTGGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAGAGA
GGGGAACCAGGACCTGATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGTCAA
CCTGGAAAGAAGGGCGACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCTGGG
CTACAAGGACCTGCCGGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGA
GGAGCTCGAGGGGCACTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGACGA
CCTGGCGCTCCAGGAGATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCAGGA
AAACCAGGATCCAAAGGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCATTC
GGTCTACAAGGATTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGCGGTGAACCTGGTGCA
CCGGGAGGCCCTGGTGCTTCTGGACTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGT
CTACCTGGACCGTCTGGATCACCTGGTGAGAGAGGACCAGCTGGATTGCAGGGCAAACAA
GGTCGATCAGGTCTTCCCGGCGATCGTGGTCCTCCAGGCGACATCGGCCCTGTAGGACCT
GCTGGCCCATCTGGCGATTCTGGACCCGAGGGCATGCCTGGACCTGAAGGCGCACCTGGC
CGCGACGGATCCACTGGAGTTAAGGGTGAAATTGGTGAAAGAGGCCACACTGGGCCACCC
GGACAAGCGGGCATGCCTGGCCCACCTGGCCTACATGGCATTGAAGGAAAGAGTGGCCCA
CGCGGCGAACCAGGTCCATCAGGTTCGCAAGGCGCACCAGGCCCTGAAGGTGGTCGAGGC
GTACCTGGTCCACAAGGTAGTCGAGGTGACACTGGTAAAACTGGAGATGCTGGACCAAGG
GGTAGCAAGGGACACCGTGGTTACAGCGGTCTACAAGGTCTCCCAGGGAAAACGGCAATT
CAAGGTGATGCAGGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGGAGCAACAGGA
CTCCGAGGTCCAGCCGGCAATGACGGCTCACCTGGCTCACCTGGCCCCATTGGGCCCACA
GGTCCACGTGGTCAATCTGGTGAAGATGGTATGCGGGGACCCACTGGGCGCGAGGGACCA
CCTGGTCCACCAGGGCCTCCAGGGCCTGGCATAGACATGGCAGCCTTCCGATTCCCAGCT
GTGAGTTCATTCAAGGGACCAAATGTGGCAGCTGACCAGCCAGTGACCAGTGATGTTGGA
CGTGATCCAGAGATGATGTTGGTCTTGAAAGAGCTGACCAGCTCAGTGGAAGACATCAAA
GCCCCACGTGGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGCTTGGACATCTATTTGGCT
GAACAACAGCAGGGAACTGTACCCAAGAGCGGTGTCCGATGGATCGATCCGAACGGCGGC
TGCAACGCTGACGGACTCGAGGTTTACTGCAACTTCCACACAATGGAGACTTGCGTCTAC
CCGACCAACCGCAACATAGAGAACGGCACCCACTACACCGGCGAGCCTGGACATACCTAC
TACGGCGAAGAGATGACCGACGGTTCAACGGTGTCATACGATCCTCCTGCGGCAAGCAGA
GTTGAGCACGCAGACTACGCCTCGCAGCTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCC
AAGCAGCAAGTGACGTTCTTCTGCCGCAACATGGTGGCTTACTACGATGCTTCGGCCGAC
AACAAGGCGCAAGCGCTGAAACTCCGTGGCTTCGGAGACGCCGAGTTCACCGCTGAGGGC
GCTGTCGGCACCACCTACAGAGTGTTGCACGATGGATGCTCTACCCGGCCGACGCAATGG
GACCGAACCGAGATCGAGTTCGAGACCCGCCTGGTCGGAAGAATGCCGATCACGGACATC
GCTCCGTTCGACATCGGTGACGCGGATCAGCAGTTCGGCGCCAAGTTCGGCCCAGTCTGC
TTCAAATAA
| ProSiteProfiles |
VWF_dom (IPR001007) - T[6-63] 11.281 |
| Pfam |
VWF_dom (IPR001007) - T[8-62] 2.2E-10 |
| SMART |
VWF_dom (IPR001007) - T[8-62] 4.3E-12 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[26-62] . |
| Pfam |
Collagen (IPR008160) - T[177-234] 3.9E-8 - T[1131-1189] 7.2E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1222-1462] 4.8E-85 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1222-1461] 1.9E-84 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1223-1462] 72.861 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1350-1461] 4.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 52.228 % | 706 | 0 |
| CO2A1_HUMAN | 60.772 % | 619 | 0 |
| CO1A1_HUMAN | 55.609 % | 618 | 0 |