- Transcript 'Cisavi.CG.ENS81.R131...' >
- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05606.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,259 / 288,199]
Amino acid sequence
Length: 1,439
>Cisavi.CG.ENS81.R131.263992-288199.05606.p
LILVVVKSDSDVDLGGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPF
QISIEGQCCKVCGDGPVFCFQGVPGSQGLDGAPGPRGPKGERGTSGRDGNPGVPGNPGPP
GPPGPGMDSGLANSYSSGNKGPSGVIAGQPGAMGPRGQPGVSGSPGPQGFQGPPGEPGEA
GPSGPPGHMGPAGIPGKDGKDGKDGRPGKTGPIGSHGPQGPRGFAGTPGLPGAKGHKGHA
GLNGLKGESGLPGADGESGAVGEAGPPGITGPRGLPGDRGRSGPAGEPGARGSDGLPGQS
GPPGPTGNSGPPGFPGSPGSKGEGGPTGARGPEGPQGSRGEAGTPGSSGPAGLPGSPGID
GASGAKGSTGASGIAGLPGIPGPRGSPGPQGNIGSSGPKGNTGNPGVQGFRGDQGPKGSQ
GSTGPQGLQGVQGEEGKRGSRGESGPPGQMGSQGERGQPGNRGFPGQDGSSGPKGASGRR
GKPGLSGPKGSVGDVGRSGEPGLPGPRGLTGKPGSDGRQGKQGPSGPAGEDGRPGPSGAT
GQKGPPGQIGFPGSKGVGGEPGKSGEKGIAGPPGSRGLAGKDGEIGPAGQPGPSGVAGDR
GEAGQPGPPGFQGLPGPPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFPGEAGSTGPQ
GLTGPRGAAGIPGSDGQKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSKGERGDSGPP
GLEGEPGKEGLRGLTGPLGPPGAQGPNGEKGDGGNVGPEGATGPRGSPGERGEPGPDGPP
GYPGSPGSEGQPGKKGDSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAP
GPAGFPGPAGRPGAPGDQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAFGLPGQPGEP
GPSGEPGAPVSLTCVGGPGASGLRGNPGSSGNPGLPGPSGSPGERGPAGLQGEEGKQGRS
GLPGDRGPPGDIGPVGPAGPSGDSGPEGMPGPEGAPGRDGSTGVKGEIGERGHTGPPGQA
GMPGPPGLHGIEGKSGPRGEPGPSGSQGAPGPEGGRGVPGPQGSRGDTGKTGDAGPRGSK
GHRGYSGLQGLPGKTAIQGDAGQPGAAGPQGLRGATGLRGPAGNDGSPGSPGPIGPTGPR
GQSGEDGMRGPTGREGPPGPPGPPGPGIDMAAFRFPAVSSFKGPNVAADQPVTSDVGRDP
EMMLVLKELTSSVEDIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNA
DGLEVYCNFHTMETCVYPTNRNIENGTHYTGEPGHTYYGEEMTDGSTVSYDPPAASRVEH
ADYASQLTFLRLLSSKAKQQVTFFCRNMVAYYDASADNKAQALKLRGFGDAEFTAEGAVG
TTYRVLHDGCSTRPTQWDRTEIEFETRLVGRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,749
>Cisavi.CG.ENS81.R131.263992-288199.05606.t
CTAATTTTAGTGGTTGTAAAATCAGATTCAGATGTAGACTTGGGCGGCGGATGCGTTTAC
AAAGGCGAGGTATACAACGCCGGCGACGTATTCAAGCCGACCAAGTGCGAGGTGTGCGTA
TGCGACGAACGTGAGGTCGTCTGCGACTTCATCCTTTGTGAAGTGCTAACCTGCCCTTTC
CAAATAAGCATTGAGGGACAGTGCTGTAAAGTCTGTGGCGACGGACCAGTATTTTGCTTC
CAGGGGGTCCCAGGATCACAAGGACTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGA
GAACGAGGTACATCAGGCAGAGATGGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCA
GGACCACCTGGACCAGGAATGGACAGCGGACTGGCCAACAGCTATTCATCTGGAAACAAG
GGACCAAGTGGAGTCATCGCAGGCCAGCCTGGCGCTATGGGACCTAGAGGACAACCAGGT
GTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGACCACCTGGCGAACCCGGCGAAGCT
GGACCCAGTGGACCACCCGGACACATGGGGCCAGCAGGCATCCCAGGAAAGGACGGAAAA
GACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCTATCGGTTCTCATGGCCCACAGGGG
CCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGTGCCAAGGGCCACAAAGGTCACGCT
GGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCTGGAGCTGATGGCGAATCAGGAGCT
GTAGGAGAAGCTGGACCCCCAGGAATTACCGGGCCACGAGGTTTGCCCGGCGACCGTGGT
CGCTCTGGACCTGCTGGCGAACCTGGTGCAAGAGGTTCCGATGGTCTACCTGGACAATCT
GGCCCACCGGGACCAACTGGTAACTCTGGACCACCAGGCTTCCCAGGTTCACCAGGATCT
AAGGGTGAAGGAGGACCGACCGGTGCCAGAGGACCCGAGGGACCACAGGGTTCCAGAGGC
GAAGCCGGCACACCTGGCTCATCTGGCCCTGCTGGATTACCTGGCTCACCTGGTATAGAT
GGTGCATCTGGTGCCAAGGGTTCAACTGGAGCCTCCGGTATTGCTGGACTTCCAGGTATT
CCAGGCCCAAGAGGATCACCTGGCCCGCAAGGAAACATTGGTTCTTCTGGACCCAAAGGA
AACACTGGAAACCCTGGAGTACAAGGTTTCAGAGGTGACCAGGGACCAAAAGGAAGCCAG
GGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAAGGAGAAGAGGGCAAAAGGGGAAGC
CGTGGCGAGTCTGGACCCCCAGGGCAAATGGGATCTCAGGGAGAGAGGGGTCAACCCGGA
AACCGTGGATTCCCGGGGCAAGACGGGAGCTCAGGTCCCAAGGGAGCTAGTGGTCGTAGG
GGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTTGGAGATGTGGGAAGATCGGGTGAA
CCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAACCAGGTTCGGATGGTCGACAAGGC
AAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGACGACCAGGACCATCCGGCGCAACT
GGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCTGGATCAAAGGGAGTTGGTGGTGAA
CCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCACCTGGATCACGTGGTCTCGCCGGT
AAAGACGGTGAAATTGGACCAGCGGGACAACCAGGACCTTCTGGAGTTGCAGGAGACAGA
GGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAAGGTCTTCCAGGTCCTCCAGGACCC
AACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTGCCTGGAGAAGTTGGTCCGTCTGGT
GAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGTGAGGCTGGTTCAACTGGACCCCAA
GGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCTGGATCCGATGGACAGAAGGGCCAA
GTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCACAAGGCGTCCAAGGTACAACTGGT
CGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGCGAACGAGGTGATTCTGGACCACCT
GGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGGGGCTTAACTGGACCTCTTGGGCCA
CCTGGAGCGCAAGGACCTAATGGAGAGAAGGGAGACGGCGGCAACGTTGGACCCGAAGGT
GCTACTGGACCCAGAGGATCACCTGGTGAGAGAGGGGAACCAGGACCTGATGGACCACCA
GGATACCCAGGATCTCCGGGTTCCGAGGGTCAACCTGGAAAGAAGGGCGACTCCGGCTCA
CGAGGTGTCAAGGGAGACTCCGGTGCACCTGGGCTACAAGGACCTGCCGGAGGTGCCGGA
CCACTTGGTCCTCCTGGTGTCGCTGGGCGCAGAGGAGCTCGAGGGGCACTTGGTGCACCG
GGACCTGCAGGATTCCCAGGACCAGCTGGACGACCTGGCGCTCCAGGAGATCAGGGAGCT
TCAGGACAGCAAGGTAACCCAGGAGAACCAGGAAAACCAGGATCCAAAGGAGCAAGTGGT
GATGAAGGACCACCTGGACCACAAGGAGCATTCGGATTGCCCGGTCAGCCTGGCGAGCCC
GGACCTAGCGGTGAACCTGGTGCACCGGTAAGTTTAACTTGTGTGGGAGGCCCTGGTGCT
TCTGGACTCAGAGGAAACCCTGGATCATCTGGAAACCCTGGTCTACCTGGACCGTCTGGA
TCACCTGGTGAGAGAGGACCAGCTGGATTGCAGGGTGAAGAGGGCAAACAAGGTCGATCA
GGTCTTCCCGGCGATCGTGGTCCTCCAGGCGACATCGGCCCTGTAGGACCTGCTGGCCCA
TCTGGCGATTCTGGACCCGAGGGCATGCCTGGACCTGAAGGCGCACCTGGCCGCGACGGA
TCCACTGGAGTTAAGGGTGAAATTGGTGAAAGAGGCCACACTGGGCCACCCGGACAAGCG
GGCATGCCTGGCCCACCTGGCCTACATGGCATTGAAGGAAAGAGTGGCCCACGCGGCGAA
CCAGGTCCATCAGGTTCGCAAGGCGCACCAGGCCCTGAAGGTGGTCGAGGCGTACCTGGT
CCACAAGGTAGTCGAGGTGACACTGGTAAAACTGGAGATGCTGGACCAAGGGGTAGCAAG
GGACACCGTGGTTACAGCGGTCTACAAGGTCTCCCAGGGAAAACGGCAATTCAAGGTGAT
GCAGGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGGAGCAACAGGACTCCGAGGT
CCAGCCGGCAATGACGGCTCACCTGGCTCACCTGGCCCCATTGGGCCCACAGGTCCACGT
GGTCAATCTGGTGAAGATGGTATGCGGGGACCCACTGGGCGCGAGGGACCACCTGGTCCA
CCAGGGCCTCCAGGGCCTGGCATAGACATGGCAGCCTTCCGATTCCCAGCTGTGAGTTCA
TTCAAGGGACCAAATGTGGCAGCTGACCAGCCAGTGACCAGTGATGTTGGACGTGATCCA
GAGATGATGTTGGTCTTGAAAGAGCTGACCAGCTCAGTGGAAGACATCAAAGCCCCACGT
GGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGCTTGGACATCTATTTGGCTGAACAACAG
CAGGGAACTGTACCCAAGAGCGGTGTCCGATGGATCGATCCGAACGGCGGCTGCAACGCT
GACGGACTCGAGGTTTACTGCAACTTCCACACAATGGAGACTTGCGTCTACCCGACCAAC
CGCAACATAGAGAACGGCACCCACTACACCGGCGAGCCTGGACATACCTACTACGGCGAA
GAGATGACCGACGGTTCAACGGTGTCATACGATCCTCCTGCGGCAAGCAGAGTTGAGCAC
GCAGACTACGCCTCGCAGCTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAA
GTGACGTTCTTCTGCCGCAACATGGTGGCTTACTACGATGCTTCGGCCGACAACAAGGCG
CAAGCGCTGAAACTCCGTGGCTTCGGAGACGCCGAGTTCACCGCTGAGGGCGCTGTCGGC
ACCACCTACAGAGTGTTGCACGATGGATGCTCTACCCGGCCGACGCAATGGGACCGAACC
GAGATCGAGTTCGAGACCCGCCTGGTCGGAAGAATGCCGATCACGGACATCGCTCCGTTC
GACATCGGTGACGCGGATCAGCAGTTCGGCGCCAAGTTCGGCCCAGTCTGCTTCAAATAA
GTCTCAGGCGGCCGCAGCCCGGCACCTGAGCGCACCACCAGATAACGAACTGAATTTAAA
CGGACCCGACCCCGATTACCGCCCGCTCCCTAAACGGATTTGACGATTGGCAGGCGGGAG
CATCGCTCCTGCGAAAAAAAAACTTTTTTTCTGACGACGACGATGACGACGACTACTTTG
TTTTGTAACAATGTACTTTTTGTGTTTGTATAACGCATTCGTAGCACCCATAACGCCGCC
TTTATTCGTTTTTTTCTCCTGCGACCTAGTTAATTTAATTGTTTTCCTATACACCCAGCC
TACAAAATCAGCATCACGAACAAATTCCTCGCCCATCTTTTGTTTCGCATATTCAGCATA
TTTTCCACTCGGCAGCTGCGTTTTCTATCATTTTTTTTACTTATTTCATGTAGCCCGCGC
GACAGTATT
| ProSiteProfiles |
VWF_dom (IPR001007) - T[16-73] 11.281 |
| SMART |
VWF_dom (IPR001007) - T[18-72] 4.3E-12 |
| Pfam |
VWF_dom (IPR001007) - T[18-72] 2.1E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[36-72] . |
| Pfam |
Collagen (IPR008160) - T[148-204] 7.7E-8 - T[847-906] 5.5E-9 - T[916-974] 1.3E-8 - T[1108-1166] 8.5E-8 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1199-1438] 1.8E-84 |
| SMART |
Fib_collagen_C (IPR000885) - T[1199-1439] 4.8E-85 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1200-1439] 72.861 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1327-1438] 5.0E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 51.95 % | 699 | 0 |
| CO2A1_HUMAN | 62.017 % | 546 | 5.11E-169 |
| CO1A1_HUMAN | 54.871 % | 617 | 0 |