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  1. Transcript 'Cisavi.CG.ENS81.R11....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R11.384276-388480.06328.t

Possible name(s)

SYNE1; SYNE2

Location

R11 [384,275 / 388,480]

Sequences

Amino acid sequence

Length: 381

>Cisavi.CG.ENS81.R11.384276-388480.06328.p
MDSLEWDDYDISQSEIETKLASGEMTDDDSIPELSPFETRDAQIPTNQTEALLPTEPKSP
QTEKPTKRTNVVDIRDLDTDARLKKPRTSDKMSEPQRQQLNNDLNDVLAWLDKVKCDLTT
VCDCVTMRELELSLAELKELQKQIESRNPIVKSIRILATPLSRNDGEMKTKLHRLEQGWD
RVNNSANQWRETLQSCFSDSKALRTDVAKIRERSTHLDQQREDLASVVKTFDSPLSIPLA
TLRKTHKDLVQIRFEVLEDRAQVASLQEMSHQLFLVDARYRGASSPPVDAAADTCDKLND
LGGRLRALLDRVTDDIHVAESALQRERHRVRDEASSNSDLDSLTSESSLRSATPIKLKML
RRKIWKKQNLKSYPHLWMLTS

Nucleotide sequence

Length: 2,479

>Cisavi.CG.ENS81.R11.384276-388480.06328.t
TGTTTATGAATGGTATCAAAATGCTGAATTCGAATGACATAGAAGGTCTGTTGGACGAAT
TCAGGATTTTCAAGAAGAGGATCGATGAGCACATTCCGATGCTCCGGAAGATGGATGAGA
GGGGAGAGCAACTCATACAAGGAGGAGATGACCGGGATTGCGTGCAGGTGGAAGAAGAAC
TGCGGGAATTCCATGAATATTGCTCACAAGTCTTTATTAGACTCGACCGCTACTACAGGA
GAATACTTCGCTTGTCGAATGACTCCGATTACAAGACATCGCTCTACCACGATTTGGAAA
TGCAAGAAATCTCGTGGTGGGCTGGGAAGAATCTGGATGCTTCATCCGACGTTGGATCTG
TTGGTTCATCTCCAGATGCCACGTCACCACTTCCCAGCAAGCGGAGCAAGAAACATATTG
CAGACTCACCCCCGGCAGTATGGACTCGTTGGAATGGGACGATTATGACATCAGTCAGTC
GGAAATCGAGACCAAATTAGCAAGTGGAGAAATGACTGACGACGACTCGATACCTGAACT
CTCGCCGTTTGAGACTCGAGATGCTCAAATACCAACCAATCAAACTGAAGCATTACTTCC
TACTGAACCAAAGTCACCACAGACTGAGAAACCAACTAAAAGAACCAACGTGGTCGACAT
CAGGGACTTGGACACCGATGCGCGCCTCAAGAAGCCAAGAACTAGTGACAAAATGTCGGA
GCCGCAGCGCCAACAGCTTAATAACGATCTCAATGACGTATTGGCATGGCTTGATAAGGT
TAAATGTGACCTCACTACAGTTTGCGATTGCGTCACTATGCGTGAACTGGAACTAAGTCT
AGCGGAATTAAAGGAACTTCAGAAGCAAATCGAATCCCGGAATCCAATCGTAAAGTCGAT
ACGAATTCTCGCAACTCCTTTATCAAGAAATGACGGTGAAATGAAGACGAAGCTGCATCG
ACTGGAGCAAGGGTGGGACCGTGTCAACAACAGCGCCAACCAGTGGAGGGAAACTCTTCA
AAGTTGCTTCTCCGACTCAAAGGCTCTGCGGACGGATGTGGCGAAAATCCGAGAACGGTC
GACACACTTAGATCAACAAAGGGAAGATTTGGCTTCTGTTGTTAAAACATTTGATTCGCC
GTTGTCAATACCGCTTGCCACCTTGCGTAAAACTCACAAAGACTTAGTGCAAATAAGATT
TGAAGTATTAGAAGACAGGGCCCAGGTTGCTTCCTTGCAAGAAATGTCACATCAGCTTTT
TCTTGTCGATGCACGTTACCGCGGCGCGTCGTCACCGCCGGTAGATGCTGCTGCCGATAC
TTGCGACAAATTGAACGATCTGGGCGGTCGATTGAGAGCACTATTGGACCGTGTTACAGA
TGATATCCACGTCGCTGAAAGTGCTCTTCAGCGAGAACGTCATCGCGTGAGAGACGAAGC
AAGTTCGAACTCAGATTTGGACTCGCTCACCAGTGAAAGTTCGTTACGTTCAGCAACACC
TATCAAGCTTAAAATGCTGCGAAGAAAGATTTGGAAGAAACAAAATCTAAAGTCGTATCC
TCACCTATGGATGCTGACGTCATAATGACATTACCAATGCAAGCCGGAACAAGGAATATC
GCTAAATATGCGGAACCAGACCTGCAGATTCTTCACCACGAAACCACGTCCAAGTCCACC
GAAAACACATACGCCAGTTTCAGTAATGAACCCGCTGACAGTGATGTAGAATCGGGTTAT
GTAGAGTATGATGTAGAATGTGAAATGCAGTTGGTACGCCATGTTGTTACAACCGCCTTT
CAGTCTGTAACACACTTAGACGAAAAACACATTGAACCTGACATTGATGAGCAACTTCGA
TCAATTAGCGGATTAAACGCAAACCACAATGTTTCCGCGACTAAAGCAAATATCTTCTGG
CGTGTTGTCAAAGCGTCTGTGCCGTTTTATATTTTCTTTTTCTTTATATATTTTCTACTA
TGGTTAAGTTCAGCATCTTGTATTATTGATGACCGAACGATTTGTTTGCAACGTAACAAC
CTCCATTATTCGTTCACCCCATTATTAACATGGACGGACGGCCCACCCCCCACATAAACG
TGGTTGATTTCAGGGAATCTCTACAATCCGTCCTCTACCACTTTCAGACTTTAAATCGTT
CGCATAATTTTCAAACGTACCTCTGTATATGTGTACTTGCTATGCTGTGGGATGAAATGT
ATAACAAAAAATTCTACCGAAATTCTTCACCAAGGTGCACAATCGTGACTAATTGCACCT
GACAATTTGTGTCCATTTATTATATATATAGCCGTGGACAATATAACGTACAGCTTGTGT
GCACTTAGTTTTGTAGGCCTTACGTATTCTGCGATTGCCCGTTTCTGATTGCCCAAACTG
TACTGCACTTTCTGCTGTGAAAACTAAAACTAGTGTAAGGAAATTATATTTTTATTTTAA
ATTGTAGCTTTAGAAATGT

InterProScan

PANTHER
SYNE1 (IPR030265) - T[69-349] 5.3E-24
Pfam
Spectrin_repeat (IPR002017) - T[97-194] 1.4E-7
SMART
Spectrin/alpha-actinin (IPR018159) - T[98-194] 5.1E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SYNE1_HUMAN 27.138 % 89.7 3.63E-19