- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1925218-1933994.16320.t
Possible name(s)
SGSM3; TBC1D2; TBC1D2B
Gene model
Location
R0 [1,925,217 / 1,933,994]
Amino acid sequence
Length: 714
>Cisavi.CG.ENS81.R0.1925218-1933994.16320.p
MEGKSVVGEPFSALEPSMKPSPKMIEKLLQTDRSFEQVEYRYDEFGFRVNEEDAAEPKSS
KLLGVPLNEEPQHKLQWQAHLEFALNSTVEDFSWANMKSSLPRSEKLQQLVSMGVPHSMR
PQVWMRLCGAIEKKHQSEITYDEIVEASLCANTSSSAEIEKDLLRTMPNNACFSSADSPG
VDKLQRGISKLRSWRWFYPDGLITAHLLLFMKEEDAFWMMCSTFDHLLPSSYYRHNLCGV
HADQRVLRQLVAQYLPNVEKSLNDHDIELSLITLHWFITLFAGVLHIKVLLRVWDAFFLD
GSIVMFKVAMGMLKMKEEMFGEVENSAEIFNTLSDIPSLMDDADMLLQAAQRTAGSLSQM
VLDTHRKKHEAYLLGEGGAEVSTLSHVFPRKQMIRRRSVIGKMISGSTVDEEFENMKAKN
IKQTELVSSLKQAIQMIIKHFQTMEHQQDTDVSVDYSSESHTHDHEHYMSVGHQRRQRAR
ALLDFQRSDDDELGFRKNDIITIISMKDEHCWVGELNGLQGWFPAKFVELLDERSKTYTS
AGDGSVNKSIVDLVRGVLCPALAAIFEHGLRRPVLLGSACHPWQFVEEAAAHEIEKDFDS
VFSRLVLCKTFRLDDDGKVLTPEELLYRCIQAVNMSHNSAHAQMDVKLRSLVCYGLNEQV
LHMWLESLCSSVGVVRKWYHPWSYLLSPGWVQIKCELRLLSKFTFYLPPDWELP
Nucleotide sequence
Length: 2,415
>Cisavi.CG.ENS81.R0.1925218-1933994.16320.t
ATGGAGGGTAAATCAGTAGTTGGGGAACCATTTTCCGCATTAGAGCCTTCTATGAAGCCA
TCCCCTAAGATGATTGAGAAGTTGTTACAGACCGATAGATCATTCGAACAAGTGGAATAT
CGCTACGATGAGTTCGGCTTCCGTGTCAATGAAGAAGATGCAGCAGAACCAAAAAGCAGC
AAATTACTTGGTGTTCCATTAAATGAAGAACCACAGCACAAGCTACAATGGCAAGCTCAT
CTTGAGTTTGCTCTCAATTCCACAGTTGAAGATTTCAGTTGGGCCAACATGAAGAGTTCG
TTACCGAGATCAGAGAAGTTGCAGCAGTTGGTGTCAATGGGGGTTCCCCACAGCATGAGG
CCACAGGTGTGGATGCGGTTGTGTGGAGCAATTGAGAAGAAGCATCAGAGCGAGATCACG
TATGATGAGATCGTCGAGGCGAGTTTGTGCGCCAACACCAGCTCATCCGCAGAGATAGAG
AAAGATCTATTAAGAACGATGCCAAACAATGCCTGTTTCTCATCCGCTGATAGCCCTGGA
GTTGACAAATTACAGCGCGGAATATCTAAGCTCAGGAGTTGGCGTTGGTTTTACCCTGAT
GGATTGATTACTGCGCATCTCTTGCTGTTCATGAAGGAGGAGGACGCATTCTGGATGATG
TGCTCCACGTTCGATCACCTCCTCCCATCCTCGTACTACCGACACAATCTCTGCGGAGTC
CATGCCGACCAGCGCGTGCTACGCCAACTTGTGGCACAATATCTGCCTAATGTGGAGAAA
TCGTTGAACGATCATGACATTGAGTTGTCGCTGATTACTTTGCACTGGTTCATCACTCTA
TTTGCTGGCGTGCTGCACATCAAGGTATTACTTCGTGTGTGGGATGCTTTCTTCTTGGAT
GGTTCTATTGTCATGTTCAAAGTTGCCATGGGAATGCTTAAAATGAAGGAGGAGATGTTT
GGGGAGGTGGAGAACTCTGCGGAAATCTTCAACACTCTCTCTGATATCCCGTCGCTCATG
GATGATGCAGATATGCTGCTGCAGGCTGCTCAGCGAACGGCTGGCTCCTTGTCACAGATG
GTGTTGGACACACACAGGAAGAAACATGAAGCTTATTTGCTGGGGGAAGGTGGGGCAGAG
GTGAGTACATTATCACATGTTTTCCCACGGAAACAAATGATTCGGCGACGATCAGTCATT
GGAAAGATGATTTCAGGTTCAACTGTTGATGAAGAATTTGAAAATATGAAGGCAAAAAAT
ATTAAGCAAACCGAGTTGGTTTCAAGTCTGAAACAAGCGATCCAGATGATTATAAAGCAT
TTCCAGACCATGGAGCATCAGCAAGATACTGATGTATCTGTGGATTATTCAAGCGAAAGT
CATACACACGACCACGAGCATTACATGTCGGTCGGCCACCAGAGGCGACAAAGAGCACGG
GCACTTTTGGATTTCCAACGAAGTGATGACGATGAACTTGGATTCAGGAAGAATGACATC
ATCACTATCATTAGCATGAAAGATGAGCACTGCTGGGTCGGGGAGTTAAATGGTCTGCAA
GGTTGGTTTCCAGCTAAGTTTGTTGAACTTCTGGATGAAAGAAGCAAAACGTACACCTCG
GCAGGGGATGGAAGTGTGAACAAGTCGATAGTGGATCTGGTGCGCGGAGTGTTGTGCCCT
GCGCTTGCAGCAATATTCGAACACGGGCTGCGACGACCTGTGCTGCTGGGCAGTGCTTGT
CATCCGTGGCAGTTTGTTGAAGAGGCAGCAGCGCACGAGATCGAAAAAGATTTCGATTCC
GTCTTTTCACGACTTGTTCTCTGCAAAACTTTTCGCCTTGATGATGATGGGAAAGTGCTC
ACTCCAGAAGAACTACTATACAGGTGCATACAAGCGGTGAATATGTCACACAACTCAGCA
CATGCTCAGATGGATGTCAAATTACGATCACTTGTGTGCTATGGCCTAAATGAACAAGTC
TTACATATGTGGTTGGAATCACTGTGTTCATCGGTGGGGGTGGTTAGGAAGTGGTATCAC
CCATGGTCGTACCTCCTCTCTCCGGGGTGGGTGCAGATCAAGTGCGAACTACGTCTCTTG
TCCAAGTTCACCTTCTACCTCCCACCTGACTGGGAGCTCCCGAAAACCAAAGCGTCCCAT
GAAACTCTGAAGGAAGGTGTGCCGAGATATGCTGGTTAAACACCCATCTCTTCAGTTGGG
ATCTATAGACGTTGCTTCACCATCATGTACATTTGCACTCGATGCCAATCATCATTTTAT
ATGGAGCTCTTTGCTCCTGCTGTTCACTGTTGTATTTGTAGTTTTAATTTAATTAGTGCA
ATTCTATTTGCTTCGAATCCAAATATTTGTAGAAGCTTTAGAGTTGAATTTTCGTAGTGT
AATATTTTGTGAAAA
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[96-258] 3.4E-28 - T[237-350] 1.23E-22 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[111-324] 1.1E-38 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[114-301] 24.887 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[118-318] 1.8E-34 |
| ProSiteProfiles |
SH3_domain (IPR001452) - T[474-533] 13.106 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[476-535] 5.12E-19 |
| SMART |
SH3_domain (IPR001452) - T[477-532] 6.7E-19 |
| CDD |
SGSM3_SH3 (IPR035833) - T[478-530] 1.75807E-32 |
| Pfam |
SH3_domain (IPR001452) - T[480-525] 4.6E-12 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[549-712] 27.344 |
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[558-589] 1.05E-12 - T[626-707] 1.05E-12 |
| Pfam |
Run_dom (IPR004012) - T[558-710] 2.4E-28 |
| SMART |
Run_dom (IPR004012) - T[648-710] 1.5E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM3_HUMAN | 58.774 % | 856 | 0 |
| TBD2B_HUMAN | 28.198 % | 148 | 5.48E-37 |
| TBD2A_HUMAN | 29.697 % | 150 | 1.59E-37 |
