- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1881089-1892983.16041.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
R0 [1,881,873 / 1,892,412]
Amino acid sequence
Length: 980
>Cisavi.CG.ENS81.R0.1881089-1892983.16041.p
MEEAVTKKFVHEESTHVLRLCGTVELCFLDGLKKRVAGFLRYNKIAALFTKVGKVLPEVA
TLVANVEDLESNINNKLLIAQVFGPKLLCYVHNMHDNHGVRRTNQADEARNSSSNSKKHL
WIRVALTSKLLDQIAEHLVDNNKKYYESSSIMADPSRGKILSSMLVGPCALDFTKMKTHD
HYWSDPPAGELLQRHRLHSRHGSPSSPGRRPALHFTPLRHHSSSDSIERGTSFRDYVESL
HQNSKMMLLYGKNNVAVQPREDVGPIPGYLSLHQEASSMLIKWTPNQLMNTQEEDGDTSS
YWEFAICVDVRDIVYLHCHQQLDKSGTLVLVGQDGVQWPPIRFPPGGHLLTFLSCIETGL
LPHGHLDPPLWCEKGKGKVFPRLQRRSNRKSSIESKEATDFVFRVSSSSDSSSFDLMNPV
STISHLWKPPEPRRPTERTNGSKRFEISRTLALSTLILPSSSRSSLKVLCDTMRRQIISR
AFYGWLAHCRHLTTVRTHLSGMVHPDLMLPDEPTDATMGVNQTTWAELMQDGKVLVGLPE
LMRLTYFGGVAHQLRHVVWAFLLGHYPPDSDVADRAAIDTRTKHQYELTMQQWMAVEDII
NQRQSKSSTDHTSTRSSISIDATMARQVLRQQSSNLSDVFTLEEVREDAKYEVIHEVAQE
DQAVRADSVPQEDTRSPESALREDDLIAQDDPVAQDEPVAQNDQVAQEAQVPEKDPVAQD
DPVAQEAQVPEKDPVAQDDPVAQNDQVAQEAQVPRDDPVAQEAQVPEKDPVAQDDPVAQD
DPVAQDDPVAQDDPVAQGDPVEPTVERNQVCYSHYIFHNLQINPPVLSSIMNPTIHRDYQ
PATSSMEGHPPGYLHCLLQPLHFIFGVRMLRAHHGTGGEKLPQRWRHGFPLRQYEILDAE
LFEHMRKNGDFTHFYFSYRWFLLDFKRELSYDGDVFSVWERIWAANYCSSHHFVLFFALA
MLQIYRDIILENDMDFTDII
Nucleotide sequence
Length: 2,940
>Cisavi.CG.ENS81.R0.1881089-1892983.16041.t
ATGGAAGAAGCTGTCACCAAGAAATTTGTGCATGAAGAGAGCACCCATGTATTGAGGCTA
TGCGGCACTGTGGAACTGTGCTTCCTGGATGGCTTGAAGAAACGAGTTGCTGGATTTCTC
CGCTACAACAAAATAGCAGCTTTGTTCACAAAGGTGGGGAAAGTGTTGCCAGAAGTGGCG
ACGTTGGTTGCTAATGTGGAAGATCTTGAATCGAACATCAACAATAAATTATTAATCGCT
CAAGTATTTGGCCCTAAGTTGCTTTGTTACGTTCACAACATGCACGACAACCACGGTGTG
CGCAGAACAAACCAAGCAGACGAAGCTCGGAACTCCAGTTCAAACAGCAAGAAACATCTG
TGGATACGAGTTGCGCTAACGAGCAAGCTGCTGGATCAAATCGCTGAACACTTGGTGGAC
AACAACAAGAAGTATTATGAATCATCTTCCATCATGGCTGACCCTTCCAGAGGAAAAATT
CTTTCTTCAATGCTCGTTGGCCCATGTGCACTGGACTTCACTAAAATGAAGACGCACGAT
CATTACTGGTCAGATCCACCAGCGGGGGAGCTATTGCAGAGGCATCGACTACACAGCAGA
CACGGCTCGCCAAGTTCCCCGGGACGACGCCCAGCGCTCCACTTCACCCCGCTCCGCCAC
CATTCCTCCTCTGATTCCATCGAACGCGGGACATCGTTCAGGGATTACGTGGAGTCGCTT
CATCAGAACTCCAAGATGATGCTTTTGTATGGGAAGAACAACGTGGCTGTGCAACCGCGT
GAAGATGTTGGTCCGATCCCAGGCTACCTCTCCCTCCACCAAGAAGCAAGCTCCATGCTG
ATCAAGTGGACTCCCAATCAACTCATGAACACACAGGAGGAGGATGGGGACACCAGTTCA
TACTGGGAGTTCGCGATCTGCGTTGATGTCCGGGACATTGTGTATCTTCATTGCCATCAG
CAATTGGATAAAAGTGGGACATTGGTATTGGTTGGTCAAGATGGCGTTCAGTGGCCTCCC
ATCCGATTCCCCCCCGGCGGCCACCTCCTCACCTTCTTATCCTGCATCGAGACCGGGTTG
CTGCCTCACGGCCATCTTGACCCACCACTCTGGTGTGAGAAGGGAAAGGGGAAAGTCTTC
CCGAGGCTCCAACGTCGTTCCAACAGAAAGTCGAGCATTGAATCGAAGGAAGCAACCGAC
TTTGTGTTCCGAGTGAGCTCCTCTTCCGACAGCAGCTCGTTCGACCTCATGAACCCAGTA
TCCACCATTTCCCATCTGTGGAAGCCTCCTGAACCCAGGCGGCCCACAGAGCGCACAAAC
GGCTCCAAGAGGTTCGAGATATCGCGGACGTTAGCTCTCTCAACGCTTATTCTTCCAAGT
TCTTCCAGGTCATCACTCAAAGTTTTATGCGACACGATGCGCCGACAAATCATTTCCCGA
GCGTTCTACGGCTGGCTGGCTCACTGCCGCCACCTAACCACCGTCCGAACTCACCTTTCG
GGGATGGTACACCCGGACCTCATGCTCCCTGACGAGCCTACTGATGCTACTATGGGTGTC
AATCAAACTACGTGGGCGGAGCTAATGCAGGATGGAAAGGTATTGGTGGGGTTGCCTGAA
TTGATGAGACTCACATACTTTGGTGGCGTGGCTCATCAGCTGCGGCACGTGGTGTGGGCT
TTCCTGCTCGGCCACTACCCACCTGACAGTGATGTGGCTGATCGTGCTGCCATCGACACG
CGCACCAAGCATCAATACGAGCTCACCATGCAGCAGTGGATGGCTGTGGAAGATATCATC
AACCAGCGCCAATCAAAGTCGTCAACGGACCACACTTCCACCAGATCATCCATCAGCATT
GATGCAACAATGGCTCGACAAGTTCTACGTCAGCAATCATCCAACTTGAGTGATGTATTC
ACATTGGAAGAGGTTCGTGAAGATGCCAAATATGAAGTGATTCACGAGGTGGCTCAGGAG
GACCAAGCTGTTCGTGCGGATTCGGTACCTCAGGAGGACACCAGGTCACCAGAGAGCGCA
CTGAGAGAAGATGATCTAATTGCGCAAGATGATCCAGTTGCACAGGATGAACCAGTTGCA
CAGAATGACCAAGTCGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGAT
GACCCTGTTGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCA
GTTGCACAGAATGACCAAGTTGCACAGGAAGCCCAGGTTCCACGGGATGACCCAGTGGCA
CAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCTGTTGCACAGGAT
GACCCTGTTGCACAGGATGACCCAGTGGCACAGGATGACCCTGTTGCACAGGGAGACCCA
GTGGAACCGACAGTTGAACGAAACCAGGTATGCTATTCCCATTATATCTTCCATAATTTG
CAAATTAACCCACCCGTGTTATCTTCTATAATGAACCCAACCATCCACAGAGATTACCAA
CCAGCCACAAGCTCAATGGAAGGCCATCCTCCAGGTTATTTACATTGTTTATTGCAGCCA
TTGCACTTCATCTTTGGTGTACGGATGCTTCGTGCTCATCATGGAACGGGTGGGGAGAAA
CTTCCCCAACGGTGGCGCCATGGATTCCCACTTCGCCAATATGAGATTCTCGATGCCGAG
TTGTTCGAACACATGCGCAAGAACGGGGATTTCACTCATTTCTACTTCTCATACCGCTGG
TTTCTTCTGGATTTCAAACGAGAGTTGTCATATGATGGGGATGTGTTCAGTGTGTGGGAA
CGCATTTGGGCGGCAAACTACTGCTCGTCGCATCACTTTGTGCTCTTCTTTGCGCTTGCC
ATGCTGCAAATATACAGGGACATCATCCTGGAGAATGACATGGATTTCACTGATATTATC
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[6-73] 2.35E-23 - T[113-174] 2.35E-23 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[11-181] 20.241 |
| Pfam |
Run_dom (IPR004012) - T[19-178] 4.0E-29 |
| SMART |
Run_dom (IPR004012) - T[118-178] 8.4E-13 |
| CDD |
SGSM1/2 (IPR037745) - T[248-405] 4.59097E-80 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[523-598] 1.88E-7 - T[896-979] 1.75E-16 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[897-969] 2.3E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 44.653 % | 563 | 0 |
| SGSM2_HUMAN | 43.75 % | 535 | 1.54E-174 |
