- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1881089-1892983.16040.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
R0 [1,881,858 / 1,892,424]
Amino acid sequence
Length: 1,122
>Cisavi.CG.ENS81.R0.1881089-1892983.16040.p
VKAIMEEAVTKKFVHEESTHVLRLCGTVELCFLDGLKKRVAGFLRYNKIAALFTKVGKVL
PESKLLIAQVFGPKLLCYVHNMHDNHGVRRTNQADEARNSSSNSKKHLWIRVALTSKLLD
QIAEHLVDNNKKYYESSSIMADPSRGKILSSMLVGPCALDFTKMKTHDHYWSDPPAGELL
QRHRLHSRHGSPSSPGRRPALHFTPLRHHSSSDSIERGTSFRDYVESLHQNSKMMLLYGK
NNVAVQPREDVGPIPGYLSLHQEASSMLIKWTPNQLMNTQEEDGDTSSYWEFAICVDVRD
IVYLHCHQQLDKSGTLVLVGQDGVQWPPIRFPPGGHLLTFLSCIETGLLPHGHLDPPLWC
EKGKGKVFPRLQRRSNRKSSIESKEATDFVFRVSSSSDSSSFDLMNPVSTISHLWKPPEP
RRPTERTNGSKRFEISRTVVIRPAMRNNKHRSGLTGNAKRLACTACTVVAGRSSLKVLCD
TMRRQIISRAFYGWLAHCRHLTTVRTHLSGMVHPDLMLPDEPTDATMGVNQTTWAELMQD
GKVLVGSELMRLTYFGGVAHQLRHVVWAFLLGHYPPDSDVADRAAIDTRTKHQYELTMQQ
WMAVEDIINQVFPVCCRYPMFSIVTPYSLSLPHILYRYPIFSIVTPYSLSLPHILYRYPI
FSIVTPYSLPIPHILYRYPIFSIVTPYSLPISHVSVPINVILQRQSKSSTDHTSTRSSIS
ICNNGNYIPPHPHPITPCSTQARQVLRQQSSNLSDVFTLEEVREDAKYEVIHEVAQEDQA
VRADSVPQEDTRSPESALREDDLIAQDDPVAQDEPVAQNDQVAQEAQVPEKDPVAQDDPV
AQEAQVPEKDPVAQDDPVAQNDQVAQEAQVPRDDPVAQEAQVPEKDPVAQDDPVAQDDPV
AQDDPVAQDDPVAQGDPVEPTVERNQTELLDSFALNLHRIDKDVQRCDRNHWYFSEEGNL
TKLRNIMSCYVWLHLDVGYMQGMCDLAAPLLVVMDDELVYGCFVLIMERVGRNFPNGGAM
DSHFANMRSLVQILDAELFEHMRKNGDFTHFYFSYRWFLLDFKRELSYDGDVFSVWERIW
AANYCSSHHFVLFFALAMLQIYRDIILENDMDFTDIIKFFNG
Nucleotide sequence
Length: 3,366
>Cisavi.CG.ENS81.R0.1881089-1892983.16040.t
GTTAAAGCTATTATGGAAGAAGCTGTCACCAAGAAATTTGTGCATGAAGAGAGCACCCAT
GTATTGAGGCTATGCGGCACTGTGGAACTGTGCTTCCTGGATGGCTTGAAGAAACGAGTT
GCTGGATTTCTCCGCTACAACAAAATAGCAGCTTTGTTCACAAAGGTGGGGAAAGTGTTG
CCAGAAAGTAAATTATTAATCGCTCAAGTATTTGGCCCTAAGTTGCTTTGTTACGTTCAC
AACATGCACGACAACCACGGTGTGCGCAGAACAAACCAAGCAGACGAAGCTCGGAACTCC
AGTTCAAACAGCAAGAAACATCTGTGGATACGAGTTGCGCTAACGAGCAAGCTGCTGGAT
CAAATCGCTGAACACTTGGTGGACAACAACAAGAAGTATTATGAATCATCTTCCATCATG
GCTGACCCTTCCAGAGGAAAAATTCTTTCTTCAATGCTCGTTGGCCCATGTGCACTGGAC
TTCACTAAAATGAAGACGCACGATCATTACTGGTCAGATCCACCAGCGGGGGAGCTATTG
CAGAGGCATCGACTACACAGCAGACACGGCTCGCCAAGTTCCCCGGGACGACGCCCAGCG
CTCCACTTCACCCCGCTCCGCCACCATTCCTCCTCTGATTCCATCGAACGCGGGACATCG
TTCAGGGATTACGTGGAGTCGCTTCATCAGAACTCCAAGATGATGCTTTTGTATGGGAAG
AACAACGTGGCTGTGCAACCGCGTGAAGATGTTGGTCCGATCCCAGGCTACCTCTCCCTC
CACCAAGAAGCAAGCTCCATGCTGATCAAGTGGACTCCCAATCAACTCATGAACACACAG
GAGGAGGATGGGGACACCAGTTCATACTGGGAGTTCGCGATCTGCGTTGATGTCCGGGAC
ATTGTGTATCTTCATTGCCATCAGCAATTGGATAAAAGTGGGACATTGGTATTGGTTGGT
CAAGATGGCGTTCAGTGGCCTCCCATCCGATTCCCCCCCGGCGGCCACCTCCTCACCTTC
TTATCCTGCATCGAGACCGGGTTGCTGCCTCACGGCCATCTTGACCCACCACTCTGGTGT
GAGAAGGGAAAGGGGAAAGTCTTCCCGAGGCTCCAACGTCGTTCCAACAGAAAGTCGAGC
ATTGAATCGAAGGAAGCAACCGACTTTGTGTTCCGAGTGAGCTCCTCTTCCGACAGCAGC
TCGTTCGACCTCATGAACCCAGTATCCACCATTTCCCATCTGTGGAAGCCTCCTGAACCC
AGGCGGCCCACAGAGCGCACAAACGGCTCCAAGAGGTTCGAGATATCGCGGACGGTGGTG
ATACGACCCGCCATGCGCAACAATAAACATCGGAGTGGTTTGACTGGGAACGCAAAGCGA
CTTGCATGTACGGCATGTACTGTGGTAGCTGGTAGGTCATCACTCAAAGTTTTATGCGAC
ACGATGCGCCGACAAATCATTTCCCGAGCGTTCTACGGCTGGCTGGCTCACTGCCGCCAC
CTAACCACCGTCCGAACTCACCTTTCGGGGATGGTACACCCGGACCTCATGCTCCCTGAC
GAGCCTACTGATGCTACTATGGGTGTCAATCAAACTACGTGGGCGGAGCTAATGCAGGAT
GGAAAGGTATTGGTGGGAAGTGAATTGATGAGACTCACATACTTTGGTGGCGTGGCTCAT
CAGCTGCGGCACGTGGTGTGGGCTTTCCTGCTCGGCCACTACCCACCTGACAGTGATGTG
GCTGATCGTGCTGCCATCGACACGCGCACCAAGCATCAATACGAGCTCACCATGCAGCAG
TGGATGGCTGTGGAAGATATCATCAACCAGGTATTCCCTGTTTGCTGCCGATACCCCATG
TTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATA
TTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATA
TTCTCTATCGTTACCCCATATTCTCTGCCAATACCCCATATTCTATACCGTTACCCCATA
TTCTCTATCGTTACCCCATATTCTCTGCCGATATCTCATGTTTCTGTGCCGATAAATGTC
ATATTGCAGCGCCAATCAAAGTCGTCAACGGACCACACTTCCACCAGATCATCCATCAGC
ATTTGCAACAATGGTAACTACATACCCCCTCACCCCCACCCAATAACCCCATGTTCCACC
CAGGCTCGACAAGTTCTACGTCAGCAATCATCCAACTTGAGTGATGTATTCACATTGGAA
GAGGTTCGTGAAGATGCCAAATATGAAGTGATTCACGAGGTGGCTCAGGAGGACCAAGCT
GTTCGTGCGGATTCGGTACCTCAGGAGGACACCAGGTCACCAGAGAGCGCACTGAGAGAA
GATGATCTAATTGCGCAAGATGATCCAGTTGCACAGGATGAACCAGTTGCACAGAATGAC
CAAGTCGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCTGTT
GCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCAGTTGCACAG
AATGACCAAGTTGCACAGGAAGCCCAGGTTCCACGGGATGACCCAGTGGCACAGGAAGCC
CAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCTGTTGCACAGGATGACCCTGTT
GCACAGGATGACCCAGTGGCACAGGATGACCCTGTTGCACAGGGAGACCCAGTGGAACCG
ACAGTTGAACGAAACCAGACTGAACTGCTGGACTCATTTGCACTGAACCTCCATCGCATC
GATAAAGATGTGCAACGCTGTGATCGTAACCACTGGTATTTCTCCGAGGAAGGAAATCTC
ACCAAGTTGCGCAATATCATGTCGTGTTACGTCTGGCTGCACCTTGATGTAGGGTATATG
CAGGGAATGTGTGACTTGGCTGCTCCTCTGCTGGTGGTGATGGATGATGAGTTGGTGTAC
GGATGCTTCGTGCTCATCATGGAACGGGTGGGGAGAAACTTCCCCAACGGTGGCGCCATG
GATTCCCACTTCGCCAATATGAGGTCGCTGGTGCAGATTCTCGATGCCGAGTTGTTCGAA
CACATGCGCAAGAACGGGGATTTCACTCATTTCTACTTCTCATACCGCTGGTTTCTTCTG
GATTTCAAACGAGAGTTGTCATATGATGGGGATGTGTTCAGTGTGTGGGAACGCATTTGG
GCGGCAAACTACTGCTCGTCGCATCACTTTGTGCTCTTCTTTGCGCTTGCCATGCTGCAA
ATATACAGGGACATCATCCTGGAGAATGACATGGATTTCACTGATATTATCAAGTTCTTC
AATGGT
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[1-162] 1.44E-23 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[15-169] 20.678 |
| Pfam |
Run_dom (IPR004012) - T[23-166] 3.3E-27 |
| SMART |
Run_dom (IPR004012) - T[106-166] 8.4E-13 |
| CDD |
SGSM1/2 (IPR037745) - T[236-393] 1.35835E-79 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[533-596] 7.32E-40 - T[923-1041] 7.32E-40 - T[1018-1121] 1.15E-22 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[554-1110] 2.6E-34 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[557-1083] 25.802 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[934-1106] 3.5E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 46.119 % | 560 | 0 |
| SGSM2_HUMAN | 44.462 % | 522 | 3.77E-168 |
| TBC15_HUMAN | 31.132 % | 111 | 5.15E-25 |
