- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1881089-1892983.16039.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
R0 [1,881,276 / 1,892,412]
Amino acid sequence
Length: 1,114
>Cisavi.CG.ENS81.R0.1881089-1892983.16039.p
MEEAVTKKFVHEESTHVLRLCGTVELCFLDGLKKRVAGFLRYNKIAALFTKVGKVLPEVA
TLVANVEDLESNINNKLLIAQVFGPKLLCYVHNMHDNHGVRRTNQADEARNSSSNSKKHL
WIRVALTSKLLDQIAEHLVDNNKKYYESSSIMADPSRGKILSSMLVGPCALDFTKMKTHD
HYWSDPPAGELLQRHRLHSRHGSPSSPGRRPALHFTPLRHHSSSDSIERGTSFRDYVESL
HQNSKMMLLYGKNNVAVQPREDVGPIPGYLSLHQEASSMLIKWTPNQLMNTQEEDGDTSS
YWEFAICVDVRDIVYLHCHQQLDKSGTLVLVGQDGVQWPPIRFPPGGHLLTFLSCIETGL
LPHGHLDPPLWCEKGKGKVFPRLQRRSNRKSSIESKEATDFVFRVSSSSDSSSFDLMNPV
STISHLWKPPEPRRPTERTNGSKRFEISRTLALSTLILPSSSRSSLKVLCDTMRRQIISR
AFYGWLAHCRHLTTVRTHLSGMVHPDLMLPDEPTDATMGVNQTTWAELMQDGKVLVGLPE
LMRLTYFGGVAHQLRHVVWAFLLGHYPPDSDVADRAAIDTRTKHQYELTMQQWMAVEDII
NQVFPVCCRYPMFSIVTPYSLSLPHILYRYPIFSIVTPYSLSLPHILYRYPIFSIVTPYS
LPIPHILYRYPIFSIQSSNLSDVFTLEEVREDAKYEVIHEVAQEDQAVRADSVPQEDTRS
PESALREDDLIAQDDPVAQDEPVAQNDQVAQEAQVPEKDPVAQDDPVAQEAQVPEKDPVA
QDDPVAQNDQVAQEAQVPRDDPVAQEAQVPEKDPVAQDDPVAQDDPVAQDDPVAQDDPVA
QGDPVEPTVERNQLRFQPRSILVTQYNTQLALYEKSNHCKIPILSNELFFLTELLDSFAL
NLHRIDKDVQRCDRNHWYFSEEGNLTKLRNIMSCYVWLHLDVGYMQGMCDLAAPLLVVMD
DESFYGCFVLIMERVGRNFPNGGAMDSHFANMRSLVQILDAELFEHMRKNGDFTHFYFSY
RWFLLDFKRELSYDGDVFSVWERIWAANYCSSHHFVLFFALAMLQIYRDIILENDMDFTD
IIKFFNEMAERHDASKLISLAQQLVAQVQQMIQK
Nucleotide sequence
Length: 3,345
>Cisavi.CG.ENS81.R0.1881089-1892983.16039.t
ATGGAAGAAGCTGTCACCAAGAAATTTGTGCATGAAGAGAGCACCCATGTATTGAGGCTA
TGCGGCACTGTGGAACTGTGCTTCCTGGATGGCTTGAAGAAACGAGTTGCTGGATTTCTC
CGCTACAACAAAATAGCAGCTTTGTTCACAAAGGTGGGGAAAGTGTTGCCAGAAGTGGCG
ACGTTGGTTGCTAATGTGGAAGATCTTGAATCGAACATCAACAATAAATTATTAATCGCT
CAAGTATTTGGCCCTAAGTTGCTTTGTTACGTTCACAACATGCACGACAACCACGGTGTG
CGCAGAACAAACCAAGCAGACGAAGCTCGGAACTCCAGTTCAAACAGCAAGAAACATCTG
TGGATACGAGTTGCGCTAACGAGCAAGCTGCTGGATCAAATCGCTGAACACTTGGTGGAC
AACAACAAGAAGTATTATGAATCATCTTCCATCATGGCTGACCCTTCCAGAGGAAAAATT
CTTTCTTCAATGCTCGTTGGCCCATGTGCACTGGACTTCACTAAAATGAAGACGCACGAT
CATTACTGGTCAGATCCACCAGCGGGGGAGCTATTGCAGAGGCATCGACTACACAGCAGA
CACGGCTCGCCAAGTTCCCCGGGACGACGCCCAGCGCTCCACTTCACCCCGCTCCGCCAC
CATTCCTCCTCTGATTCCATCGAACGCGGGACATCGTTCAGGGATTACGTGGAGTCGCTT
CATCAGAACTCCAAGATGATGCTTTTGTATGGGAAGAACAACGTGGCTGTGCAACCGCGT
GAAGATGTTGGTCCGATCCCAGGCTACCTCTCCCTCCACCAAGAAGCAAGCTCCATGCTG
ATCAAGTGGACTCCCAATCAACTCATGAACACACAGGAGGAGGATGGGGACACCAGTTCA
TACTGGGAGTTCGCGATCTGCGTTGATGTCCGGGACATTGTGTATCTTCATTGCCATCAG
CAATTGGATAAAAGTGGGACATTGGTATTGGTTGGTCAAGATGGCGTTCAGTGGCCTCCC
ATCCGATTCCCCCCCGGCGGCCACCTCCTCACCTTCTTATCCTGCATCGAGACCGGGTTG
CTGCCTCACGGCCATCTTGACCCACCACTCTGGTGTGAGAAGGGAAAGGGGAAAGTCTTC
CCGAGGCTCCAACGTCGTTCCAACAGAAAGTCGAGCATTGAATCGAAGGAAGCAACCGAC
TTTGTGTTCCGAGTGAGCTCCTCTTCCGACAGCAGCTCGTTCGACCTCATGAACCCAGTA
TCCACCATTTCCCATCTGTGGAAGCCTCCTGAACCCAGGCGGCCCACAGAGCGCACAAAC
GGCTCCAAGAGGTTCGAGATATCGCGGACGTTAGCTCTCTCAACGCTTATTCTTCCAAGT
TCTTCCAGGTCATCACTCAAAGTTTTATGCGACACGATGCGCCGACAAATCATTTCCCGA
GCGTTCTACGGCTGGCTGGCTCACTGCCGCCACCTAACCACCGTCCGAACTCACCTTTCG
GGGATGGTACACCCGGACCTCATGCTCCCTGACGAGCCTACTGATGCTACTATGGGTGTC
AATCAAACTACGTGGGCGGAGCTAATGCAGGATGGAAAGGTATTGGTGGGGTTGCCTGAA
TTGATGAGACTCACATACTTTGGTGGCGTGGCTCATCAGCTGCGGCACGTGGTGTGGGCT
TTCCTGCTCGGCCACTACCCACCTGACAGTGATGTGGCTGATCGTGCTGCCATCGACACG
CGCACCAAGCATCAATACGAGCTCACCATGCAGCAGTGGATGGCTGTGGAAGATATCATC
AACCAGGTATTCCCTGTTTGCTGCCGATACCCCATGTTCTCTATCGTTACCCCATATTCT
CTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCT
CTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCT
CTGCCAATACCCCATATTCTATACCGTTACCCCATATTCTCTATCCAATCATCCAACTTG
AGTGATGTATTCACATTGGAAGAGGTTCGTGAAGATGCCAAATATGAAGTGATTCACGAG
GTGGCTCAGGAGGACCAAGCTGTTCGTGCGGATTCGGTACCTCAGGAGGACACCAGGTCA
CCAGAGAGCGCACTGAGAGAAGATGATCTAATTGCGCAAGATGATCCAGTTGCACAGGAT
GAACCAGTTGCACAGAATGACCAAGTCGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCA
GTTGCACAGGATGACCCTGTTGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCA
CAGGATGACCCAGTTGCACAGAATGACCAAGTTGCACAGGAAGCCCAGGTTCCACGGGAT
GACCCAGTGGCACAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCT
GTTGCACAGGATGACCCTGTTGCACAGGATGACCCAGTGGCACAGGATGACCCTGTTGCA
CAGGGAGACCCAGTGGAACCGACAGTTGAACGAAACCAGCTCCGATTCCAGCCACGTTCC
ATACTCGTCACTCAGTACAACACACAACTCGCTCTCTATGAGAAGTCAAACCATTGTAAA
ATCCCAATTCTATCTAATGAGTTGTTTTTTCTTACTGAACTGCTGGACTCATTTGCACTG
AACCTCCATCGCATCGATAAAGATGTGCAACGCTGTGATCGTAACCACTGGTATTTCTCC
GAGGAAGGAAATCTCACCAAGTTGCGCAATATCATGTCGTGTTACGTCTGGCTGCACCTT
GATGTAGGGTATATGCAGGGAATGTGTGACTTGGCTGCTCCTCTGCTGGTGGTGATGGAT
GATGAGAGCTTTTACGGATGCTTCGTGCTCATCATGGAACGGGTGGGGAGAAACTTCCCC
AACGGTGGCGCCATGGATTCCCACTTCGCCAATATGAGGTCGCTGGTGCAGATTCTCGAT
GCCGAGTTGTTCGAACACATGCGCAAGAACGGGGATTTCACTCATTTCTACTTCTCATAC
CGCTGGTTTCTTCTGGATTTCAAACGAGAGTTGTCATATGATGGGGATGTGTTCAGTGTG
TGGGAACGCATTTGGGCGGCAAACTACTGCTCGTCGCATCACTTTGTGCTCTTCTTTGCG
CTTGCCATGCTGCAAATATACAGGGACATCATCCTGGAGAATGACATGGATTTCACTGAT
ATTATCAAGTTCTTCAATGAAATGGCGGAGCGACACGACGCGTCGAAGTTGATATCGCTC
GCTCAGCAGTTGGTCGCGCAAGTTCAACAAATGATTCAGAAGTAA
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[6-73] 2.88E-23 - T[113-174] 2.88E-23 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[11-181] 20.241 |
| Pfam |
Run_dom (IPR004012) - T[19-178] 4.8E-29 |
| SMART |
Run_dom (IPR004012) - T[118-178] 8.4E-13 |
| CDD |
SGSM1/2 (IPR037745) - T[248-405] 9.93753E-80 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[523-588] 4.18E-37 - T[888-1006] 4.18E-37 - T[983-1105] 6.8E-27 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[549-1048] 26.194 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[853-1075] 2.4E-32 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[901-1071] 3.6E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 45.4 % | 556 | 1.12E-179 |
| SGSM2_HUMAN | 44.878 % | 526 | 1.39E-169 |
| TBC15_HUMAN | 31.25 % | 117 | 9.25E-27 |
