- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1881089-1892983.16038.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
R0 [1,881,144 / 1,892,968]
Amino acid sequence
Length: 1,060
>Cisavi.CG.ENS81.R0.1881089-1892983.16038.p
ADADKHENLLRLLKCQVKAIMEEAVTKKFVHEESTHVLRLCGTVELCFLDGLKKRVAGFL
RYNKIAALFTKVGKVLPEVATLSKLLIAQVFGPKLLCYVHNMHDNHGVRRTNQADEARNS
SSNSKKHLWIRVALTSKLLDQIAEHLVDNNNLYCCRKYYESSSIMADPSRGKILSSMLVG
PCALDFTKMKTHDHYWSDPPAGELLQRHRLHSRHGSPSSPGRRPALHFTPLRHHSSSDSI
ERGTSFRDYVESLHQNSKMMLLYGKNNVAVQPREDVGPIPGYLSLHQEASSMLIKWTPNQ
LMNTQEEDGDTSSYWEFAICVDVRDIVYLHCHQQLDKSGTLVLVGQDGVQWPPIRFPPGG
HLLTFLSCIETGLLPHGHLDPPLWCEKGKGKVFPRLQRRSNRKSSIESKEATDFVFRVSS
SSDSSYVTCHRSLATPPPAFDLMNPVSTISHLWKPPEPRRPTERTNGSKRFEISRTVVIR
PAMRNNKHRSGLTGNAKRLACTACTVVAGSTVKTYYMSYCNYATLASQLQGSSLKVLCDT
MRRQIISRAFYGWLAHCRHLTTVRTHLSGMVHPDLMLPDEPTDATMGVNQTTWAELMQDG
KLKSRSELMRLTYFGGVAHQLRHVVWAFLLGHYPPDSDVADRAAIDTRTKHQYELTMQQW
MAVEDIINQVFPVCCRYPMFSIVTPYSLSLPHILYQVREDAKYEVIHEVAQEDQAVRADS
VPQEDTRSPESALREDDLIAQDDPVAQDEPVAQNDQVAQEAQVPEKDPVAQDDPVAQEAQ
VPEKDPVAQDDPVAQNDQVAQEAQVPRDDPVAQEAQVPEKDPVAQDDPTELLDSFALNLH
RIDKDVQRCDRNHWYFSEEGNLTKLRNIMSCYVWLHLDVGYMQGMCDLAAPLLVVMDDEL
VYGCFVLIMERVGRNFPNGGAMDSHFANMRSLVQILDAELFEHMRKNGDFTHFYFSYRWF
LLDFKRGKATHVMHAELSYDGDVFSVWERIWAANYCSSHHFVLFFALAMLQIYRDIILEN
DMDFTDIIKFFNEMAERHDASKLISLAQQLVAQVQQMIQK
Nucleotide sequence
Length: 3,315
>Cisavi.CG.ENS81.R0.1881089-1892983.16038.t
GCAGATGCCGATAAACATGAAAATCTCTTGCGACTTCTTAAATGCCAGGTTAAAGCTATT
ATGGAAGAAGCTGTCACCAAGAAATTTGTGCATGAAGAGAGCACCCATGTATTGAGGCTA
TGCGGCACTGTGGAACTGTGCTTCCTGGATGGCTTGAAGAAACGAGTTGCTGGATTTCTC
CGCTACAACAAAATAGCAGCTTTGTTCACAAAGGTGGGGAAAGTGTTGCCAGAAGTGGCG
ACGTTGAGTAAATTATTAATCGCTCAAGTATTTGGCCCTAAGTTGCTTTGTTACGTTCAC
AACATGCACGACAACCACGGTGTGCGCAGAACAAACCAAGCAGACGAAGCTCGGAACTCC
AGTTCAAACAGCAAGAAACATCTGTGGATACGAGTTGCGCTAACGAGCAAGCTGCTGGAT
CAAATCGCTGAACACTTGGTGGACAACAACAATTTGTATTGTTGCAGGAAGTATTATGAA
TCATCTTCCATCATGGCTGACCCTTCCAGAGGAAAAATTCTTTCTTCAATGCTCGTTGGC
CCATGTGCACTGGACTTCACTAAAATGAAGACGCACGATCATTACTGGTCAGATCCACCA
GCGGGGGAGCTATTGCAGAGGCATCGACTACACAGCAGACACGGCTCGCCAAGTTCCCCG
GGACGACGCCCAGCGCTCCACTTCACCCCGCTCCGCCACCATTCCTCCTCTGATTCCATC
GAACGCGGGACATCGTTCAGGGATTACGTGGAGTCGCTTCATCAGAACTCCAAGATGATG
CTTTTGTATGGGAAGAACAACGTGGCTGTGCAACCGCGTGAAGATGTTGGTCCGATCCCA
GGCTACCTCTCCCTCCACCAAGAAGCAAGCTCCATGCTGATCAAGTGGACTCCCAATCAA
CTCATGAACACACAGGAGGAGGATGGGGACACCAGTTCATACTGGGAGTTCGCGATCTGC
GTTGATGTCCGGGACATTGTGTATCTTCATTGCCATCAGCAATTGGATAAAAGTGGGACA
TTGGTATTGGTTGGTCAAGATGGCGTTCAGTGGCCTCCCATCCGATTCCCCCCCGGCGGC
CACCTCCTCACCTTCTTATCCTGCATCGAGACCGGGTTGCTGCCTCACGGCCATCTTGAC
CCACCACTCTGGTGTGAGAAGGGAAAGGGGAAAGTCTTCCCGAGGCTCCAACGTCGTTCC
AACAGAAAGTCGAGCATTGAATCGAAGGAAGCAACCGACTTTGTGTTCCGAGTGAGCTCC
TCTTCCGACAGCAGCTATGTGACGTGCCACCGTAGCCTCGCGACACCCCCACCAGCGTTC
GACCTCATGAACCCAGTATCCACCATTTCCCATCTGTGGAAGCCTCCTGAACCCAGGCGG
CCCACAGAGCGCACAAACGGCTCCAAGAGGTTCGAGATATCGCGGACGGTGGTGATACGA
CCCGCCATGCGCAACAATAAACATCGGAGTGGTTTGACTGGGAACGCAAAGCGACTTGCA
TGTACGGCATGTACTGTGGTAGCTGGTAGTACAGTAAAAACTTATTATATGTCATATTGC
AACTATGCCACTCTCGCCAGTCAACTACAGGGGTCATCACTCAAAGTTTTATGCGACACG
ATGCGCCGACAAATCATTTCCCGAGCGTTCTACGGCTGGCTGGCTCACTGCCGCCACCTA
ACCACCGTCCGAACTCACCTTTCGGGGATGGTACACCCGGACCTCATGCTCCCTGACGAG
CCTACTGATGCTACTATGGGTGTCAATCAAACTACGTGGGCGGAGCTAATGCAGGATGGA
AAGTTAAAAAGCAGAAGTGAATTGATGAGACTCACATACTTTGGTGGCGTGGCTCATCAG
CTGCGGCACGTGGTGTGGGCTTTCCTGCTCGGCCACTACCCACCTGACAGTGATGTGGCT
GATCGTGCTGCCATCGACACGCGCACCAAGCATCAATACGAGCTCACCATGCAGCAGTGG
ATGGCTGTGGAAGATATCATCAACCAGGTATTCCCTGTTTGCTGCCGATACCCCATGTTC
TCTATCGTTACCCCATATTCTCTATCGTTACCCCATATTCTCTATCAGGTTCGTGAAGAT
GCCAAATATGAAGTGATTCACGAGGTGGCTCAGGAGGACCAAGCTGTTCGTGCGGATTCG
GTACCTCAGGAGGACACCAGGTCACCAGAGAGCGCACTGAGAGAAGATGATCTAATTGCG
CAAGATGATCCAGTTGCACAGGATGAACCAGTTGCACAGAATGACCAAGTCGCACAGGAA
GCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCTGTTGCACAGGAAGCCCAG
GTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCAGTTGCACAGAATGACCAAGTTGCA
CAGGAAGCCCAGGTTCCACGGGATGACCCAGTGGCACAGGAAGCCCAGGTTCCAGAAAAG
GACCCAGTTGCACAGGATGACCCTACTGAACTGCTGGACTCATTTGCACTGAACCTCCAT
CGCATCGATAAAGATGTGCAACGCTGTGATCGTAACCACTGGTATTTCTCCGAGGAAGGA
AATCTCACCAAGTTGCGCAATATCATGTCGTGTTACGTCTGGCTGCACCTTGATGTAGGG
TATATGCAGGGAATGTGTGACTTGGCTGCTCCTCTGCTGGTGGTGATGGATGATGAGTTG
GTGTACGGATGCTTCGTGCTCATCATGGAACGGGTGGGGAGAAACTTCCCCAACGGTGGC
GCCATGGATTCCCACTTCGCCAATATGAGGTCGCTGGTGCAGATTCTCGATGCCGAGTTG
TTCGAACACATGCGCAAGAACGGGGATTTCACTCATTTCTACTTCTCATACCGCTGGTTT
CTTCTGGATTTCAAACGAGGTAAAGCAACCCATGTTATGCATGCAGAGTTGTCATATGAT
GGGGATGTGTTCAGTGTGTGGGAACGCATTTGGGCGGCAAACTACTGCTCGTCGCATCAC
TTTGTGCTCTTCTTTGCGCTTGCCATGCTGCAAATATACAGGGACATCATCCTGGAGAAT
GACATGGATTTCACTGATATTATCAAGTTCTTCAATGAAATGGCGGAGCGACACGACGCG
TCGAAGTTGATATCGCTCGCTCAGCAGTTGGTCGCGCAAGTTCAACAAATGATTCAGAAG
TAACTCTTCTGTGAGATGAAGTGCAATACGCGAGGTGTAATTATTCCGGCGCCCTCCCTT
TTATCATCGTTCCGTGCAATTCATGTTTTACTGTGTCGTCCTTGCACATATATATTGCTG
TTAGTTGCCATGCGA
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[4-187] 4.45E-27 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[31-194] 21.989 |
| Pfam |
Run_dom (IPR004012) - T[39-191] 4.9E-25 |
| SMART |
Run_dom (IPR004012) - T[126-191] 2.7E-10 |
| CDD |
SGSM1/2 (IPR037745) - T[261-418] 1.32969E-80 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[592-655] 5.49E-41 - T[825-943] 5.49E-41 - T[920-1051] 1.12E-21 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[613-1021] 1.1E-31 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[616-994] 24.74 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[838-1017] 8.4E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 44.971 % | 563 | 0 |
| SGSM2_HUMAN | 44.712 % | 436 | 2.19E-136 |
| TBC15_HUMAN | 29.954 % | 110 | 7.89E-25 |
