- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1881089-1892983.16036.t
Possible name(s)
SGSM1; SGSM2; TBC1D15
Gene model
Location
R0 [1,881,088 / 1,892,424]
Amino acid sequence
Length: 994
>Cisavi.CG.ENS81.R0.1881089-1892983.16036.p
VKAIMEEAVTKKFVHEESTHVLRLCGTVELCFLDGLKKRVAGFLRYNKIAALFTKVGKVL
PEVATLVANVEDLESNINKTNQADEARNSSSNSKKHLWIRVALTSKLLDQIAEHLVDNNK
KYYESSSIMADPSRGKILSSMLVGPCALDFTKMKTHDHYWSDPPAGELLQRHRLHSRHGS
PSSPGRRPALHFTPLRHHSSSDSIERGTSFRDYVESLHQNSKMMLLYGKNNVAVQPREDV
GPIPGYLSLHQEASSMLIKWTPNQLMNTQEEDGDTSSYWEFAICVDVRDIVYLHCHQQLD
KSGTLVLVGQDGVQWPPIRFPPGGHLLTFLSCIETGLLPHGHLDPPLWCEKGKGKVFPRL
QRRSNRKSSIESKEATDFVFRVSSSSDSSCKLVVDVICMVIVICMVCVDVTCHRSLATPP
PAFDLMNPVHGTHLMDLYLISICTCTTTSSPVTTPCPTSPLALSSRSSLKVLCDTMRRQI
ISRAFYGWLAHCRHLTTVRTHLSGMVHPDLMLPDEPTDATMGVNQTTWAELMQDGKLKSR
SELMRLTYFGGVAHQLRHVVWAFLLGHYPPDSDVADRAAIDTRTKHQYELTMQQWMAVED
IINQRQSKSSTDHTSTRSSISIDATMDTRSPESALREDDLIAQDDPVAQDEPVAQNDQVA
QEAQVPEKDPVAQDDPVAQEAQVPEKDPVAQDDPVAQNDQVAQEAQVPRDDPVAQEAQVP
EKDPVAQDDPVAQDDPVAQDDPVAQDDPVAQGDPVEPTVERNQVCYFGSSTTELLDSFAL
NLHRIDKDVQRCDRNHWYFSEEGNLTKLRNIMSCYVWLHLDVGYMQGMCDLAAPLLVVMD
DELVYGCFVLIMERVGRNFPNGGAMDSHFANMRSLVQILDAELFEHMRKNGDFTHFYFSY
RWFLLDFKRELSYDGDVFSVWERIWAANYCSSHHFVLFFALAMLQIYRDIILENDMDFTD
IIKFFNEMAERHDASKLISLAQQLVAQVQQMIQK
Nucleotide sequence
Length: 3,173
>Cisavi.CG.ENS81.R0.1881089-1892983.16036.t
GTTAAAGCTATTATGGAAGAAGCTGTCACCAAGAAATTTGTGCATGAAGAGAGCACCCAT
GTATTGAGGCTATGCGGCACTGTGGAACTGTGCTTCCTGGATGGCTTGAAGAAACGAGTT
GCTGGATTTCTCCGCTACAACAAAATAGCAGCTTTGTTCACAAAGGTGGGGAAAGTGTTG
CCAGAAGTGGCGACGTTGGTTGCTAATGTGGAAGATCTTGAATCGAACATCAACAAAACA
AACCAAGCAGACGAAGCTCGGAACTCCAGTTCAAACAGCAAGAAACATCTGTGGATACGA
GTTGCGCTAACGAGCAAGCTGCTGGATCAAATCGCTGAACACTTGGTGGACAACAACAAG
AAGTATTATGAATCATCTTCCATCATGGCTGACCCTTCCAGAGGAAAAATTCTTTCTTCA
ATGCTCGTTGGCCCATGTGCACTGGACTTCACTAAAATGAAGACGCACGATCATTACTGG
TCAGATCCACCAGCGGGGGAGCTATTGCAGAGGCATCGACTACACAGCAGACACGGCTCG
CCAAGTTCCCCGGGACGACGCCCAGCGCTCCACTTCACCCCGCTCCGCCACCATTCCTCC
TCTGATTCCATCGAACGCGGGACATCGTTCAGGGATTACGTGGAGTCGCTTCATCAGAAC
TCCAAGATGATGCTTTTGTATGGGAAGAACAACGTGGCTGTGCAACCGCGTGAAGATGTT
GGTCCGATCCCAGGCTACCTCTCCCTCCACCAAGAAGCAAGCTCCATGCTGATCAAGTGG
ACTCCCAATCAACTCATGAACACACAGGAGGAGGATGGGGACACCAGTTCATACTGGGAG
TTCGCGATCTGCGTTGATGTCCGGGACATTGTGTATCTTCATTGCCATCAGCAATTGGAT
AAAAGTGGGACATTGGTATTGGTTGGTCAAGATGGCGTTCAGTGGCCTCCCATCCGATTC
CCCCCCGGCGGCCACCTCCTCACCTTCTTATCCTGCATCGAGACCGGGTTGCTGCCTCAC
GGCCATCTTGACCCACCACTCTGGTGTGAGAAGGGAAAGGGGAAAGTCTTCCCGAGGCTC
CAACGTCGTTCCAACAGAAAGTCGAGCATTGAATCGAAGGAAGCAACCGACTTTGTGTTC
CGAGTGAGCTCCTCTTCCGACAGCAGCTGTAAGTTGGTAGTCGATGTAATCTGCATGGTC
ATTGTTATATGCATGGTATGTGTAGATGTGACGTGCCACCGTAGCCTCGCGACACCCCCA
CCAGCGTTCGACCTCATGAACCCAGTACATGGGACTCATCTGATGGATTTGTACCTCATC
TCGATATGTACGTGTACGACCACCAGCAGCCCCGTCACTACACCCTGCCCAACTTCACCC
CTGGCGCTTTCTTCCAGGTCATCACTCAAAGTTTTATGCGACACGATGCGCCGACAAATC
ATTTCCCGAGCGTTCTACGGCTGGCTGGCTCACTGCCGCCACCTAACCACCGTCCGAACT
CACCTTTCGGGGATGGTACACCCGGACCTCATGCTCCCTGACGAGCCTACTGATGCTACT
ATGGGTGTCAATCAAACTACGTGGGCGGAGCTAATGCAGGATGGAAAGTTAAAAAGCAGA
AGTGAATTGATGAGACTCACATACTTTGGTGGCGTGGCTCATCAGCTGCGGCACGTGGTG
TGGGCTTTCCTGCTCGGCCACTACCCACCTGACAGTGATGTGGCTGATCGTGCTGCCATC
GACACGCGCACCAAGCATCAATACGAGCTCACCATGCAGCAGTGGATGGCTGTGGAAGAT
ATCATCAACCAGCGCCAATCAAAGTCGTCAACGGACCACACTTCCACCAGATCATCCATC
AGCATTGATGCAACAATGGACACCAGGTCACCAGAGAGCGCACTGAGAGAAGATGATCTA
ATTGCGCAAGATGATCCAGTTGCACAGGATGAACCAGTTGCACAGAATGACCAAGTCGCA
CAGGAAGCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCTGTTGCACAGGAA
GCCCAGGTTCCAGAAAAGGACCCAGTTGCACAGGATGACCCAGTTGCACAGAATGACCAA
GTTGCACAGGAAGCCCAGGTTCCACGGGATGACCCAGTGGCACAGGAAGCCCAGGTTCCA
GAAAAGGACCCAGTTGCACAGGATGACCCTGTTGCACAGGATGACCCTGTTGCACAGGAT
GACCCAGTGGCACAGGATGACCCTGTTGCACAGGGAGACCCAGTGGAACCGACAGTTGAA
CGAAACCAGGTATGCTACTTCGGCAGTTCCACTACTGAACTGCTGGACTCATTTGCACTG
AACCTCCATCGCATCGATAAAGATGTGCAACGCTGTGATCGTAACCACTGGTATTTCTCC
GAGGAAGGAAATCTCACCAAGTTGCGCAATATCATGTCGTGTTACGTCTGGCTGCACCTT
GATGTAGGGTATATGCAGGGAATGTGTGACTTGGCTGCTCCTCTGCTGGTGGTGATGGAT
GATGAGTTGGTGTACGGATGCTTCGTGCTCATCATGGAACGGGTGGGGAGAAACTTCCCC
AACGGTGGCGCCATGGATTCCCACTTCGCCAATATGAGGTCGCTGGTGCAGATTCTCGAT
GCCGAGTTGTTCGAACACATGCGCAAGAACGGGGATTTCACTCATTTCTACTTCTCATAC
CGCTGGTTTCTTCTGGATTTCAAACGAGAGTTGTCATATGATGGGGATGTGTTCAGTGTG
TGGGAACGCATTTGGGCGGCAAACTACTGCTCGTCGCATCACTTTGTGCTCTTCTTTGCG
CTTGCCATGCTGCAAATATACAGGGACATCATCCTGGAGAATGACATGGATTTCACTGAT
ATTATCAAGTTCTTCAATGAAATGGCGGAGCGACACGACGCGTCGAAGTTGATATCGCTC
GCTCAGCAGTTGGTCGCGCAAGTTCAACAAATGATTCAGAAGTAACTCTTCTGTGAGATG
AAGTGCAATACGCGAGGTGTAATTATTCCGGCGCCCTCCCTTTTATCATCGTTCCGTGCA
ATTCATGTTTTACTGTGTCGTCCTTGCACATATATATTGCTGTTAGTTGCCATGCGATTT
GCTGCGCAGATGTTCTTAAATCGAGTAAAATACATTTTTGTCGTCGTGAGTAA
| SUPERFAMILY |
Run_dom_sf (IPR037213) - T[1-151] 2.35E-25 |
| ProSiteProfiles |
Run_dom (IPR004012) - T[15-158] 21.465 |
| Pfam |
Run_dom (IPR004012) - T[23-155] 9.1E-30 |
| SMART |
Run_dom (IPR004012) - T[95-155] 8.4E-13 |
| CDD |
SGSM1/2 (IPR037745) - T[225-382] 1.19608E-80 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[527-590] 1.57E-40 - T[768-886] 1.57E-40 - T[863-985] 6.02E-27 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[548-955] 2.4E-38 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[551-928] 28.235 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[773-951] 2.1E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SGSM1_HUMAN | 46.086 % | 574 | 0 |
| SGSM2_HUMAN | 45.882 % | 870 | 0 |
| TBC15_HUMAN | 31.25 % | 118 | 2.44E-27 |
