- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1706014-1723939.15665.t
Possible name(s)
NOTCH1; NOTCH2; NOTCH3
Gene model
Location
R0 [1,706,013 / 1,717,531]
Amino acid sequence
Length: 342
>Cisavi.CG.ENS81.R0.1706014-1723939.15665.p
GACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNC
DSNINDCSGNPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNS
YTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDQDINECSA
TNNCAVCQNLVPSYFCVCEISSYEGILCTWAVIGTTTYRVPATTTTTSRIAAIAICAGLD
EGGGFLGEPLAANLPTILTKVVARSTFVSGFMWLNVVRQSGSTWVYGATGTVATTNFEFE
ANVLDNCAVMRVSDFKWIIVSCTSFTADILCQRAITGKVVSP
Nucleotide sequence
Length: 1,173
>Cisavi.CG.ENS81.R0.1706014-1723939.15665.t
ATGGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGG
GAACCAACTGTGATTCAAATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTT
GCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACT
GTGATTCAAACATAAACGATTGTTCTGGTAATCCTTGTGTGAATGGAGCTTGCACTGATG
GTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAA
ATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACT
CGTATACCTGCACCTGTACTGCTGGATGGCAGGGTACCAACTGTGATTCAAATATAGATG
ATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACTCGTATACCT
GCACTTGTACTGCTGGATGGCAGGGAACCAACTGTGATCAAGATATTAATGAATGTTCCG
CGACAAATAATTGTGCCGTTTGCCAAAATTTGGTTCCTTCGTATTTCTGTGTCTGTGAAA
TATCAAGCTACGAAGGAATTTTATGCACATGGGCGGTTATCGGTACAACGACATATCGGG
TGCCTGCCACCACCACTACCACCAGCCGAATCGCTGCAATCGCTATTTGTGCTGGTCTTG
ATGAAGGGGGTGGTTTCTTAGGTGAACCCCTTGCTGCCAACTTGCCAACTATTCTCACAA
AAGTTGTCGCCAGAAGCACATTTGTGTCTGGTTTCATGTGGCTTAATGTGGTTCGACAAT
CAGGATCAACATGGGTGTATGGAGCAACCGGTACTGTCGCTACCACCAACTTTGAATTTG
AGGCGAATGTGTTGGACAACTGTGCAGTGATGAGAGTCAGTGATTTCAAATGGATCATTG
TATCTTGCACCAGCTTCACCGCAGATATTTTGTGCCAACGCGCAATTACCGGCAAAGTAG
TGTCTCCTTAAACGTATTAAATTTTCTATTTTTATTTATTTCGTTTTGCAACTGTTGCCC
ATACTCGACTGCCAATTGTGAATATTATGTTTTTTTTTATTTGCGTGAACAGAATTTTAA
ACATAATAAAAATATGATCGAGTGTCAAACATA
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[1-24] 13.121 - T[26-61] 18.666 - T[63-98] 18.255 - T[100-135] 18.666 - T[137-172] 18.666 - T[174-209] 10.51 |
| SMART |
EGF-like_dom (IPR000742) - T[1-24] 72.0 - T[29-61] 1.2E-5 - T[66-98] 3.5E-5 - T[103-135] 1.2E-5 - T[140-172] 1.2E-5 - T[177-209] 23.0 |
| Pfam |
EGF-like_CS (IPR013032) - T[1-18] 7.8E-4 - T[72-92] 4.9E-5 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[1-24] 0.12 - T[26-61] 1.0E-9 - T[63-98] 5.0E-9 - T[100-135] 1.0E-9 - T[137-172] 1.0E-9 - T[174-209] 0.0071 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[3-104] 4.87E-9 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[3-14] . - T[40-51] . - T[77-88] . - T[114-125] . - T[151-162] . - T[187-198] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[12-23] . - T[12-23] . - T[49-60] . - T[49-60] . - T[86-97] . - T[86-97] . - T[123-134] . - T[123-134] . - T[160-171] . - T[160-171] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[26-49] . - T[100-123] . |
| Pfam |
EGF-like_dom (IPR000742) - T[30-58] 2.5E-5 - T[104-132] 2.5E-5 - T[141-169] 2.5E-5 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[224-335] 9.43E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NOTC3_HUMAN | 46.995 % | 189 | 1.98E-53 |
| NOTC2_HUMAN | 44.131 % | 182 | 4.53E-51 |
| NOTC1_HUMAN | 45.622 % | 187 | 6.56E-53 |