- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1689792-1701466.15652.t
Possible name(s)
CADM4; NECTIN3; PVR
Gene model
Location
R0 [1,689,791 / 1,701,466]
Amino acid sequence
Length: 593
>Cisavi.CG.ENS81.R0.1689792-1701466.15652.p
MILRFFLKLGIWIVLTMLSLYDGAASNNVIQGNTASIPCYNPQVASSFSNDVLVKIQFKT
DETSPTLLVAHYKPSSGRPPVVFANSYNTRLVFTSTGQLEIKFVGLRDEGIYECVVEIYS
QLPTSLTTPLVVFVAPEYEVKKVNNPLVVGNPGMIVNAATCEARSGKPQADVSWGTIRHL
DFDQTLTNSSTSPQLTTTISTLHIEPTKFYNKQSFYCEISHPALPATVRQTIFLNVTYSP
ETPVITVSEDGSSLTCAVDANPPASISWQLPPSAPSATFNGPTVVMTSPNTPENSNDTYI
CIATNGVGQPARNSITAKKASNIIIITKESNVGVIIGAVIGSLVFLALIIAVVYFFLIRP
SREKDTGPYEQTISPFKPDDGSRQSSVRMGSTHRPLIEHANESLNKNRPPSPNQPPPDDA
HESGSSDSDSSEGNHDVDLEVDPTTNLVDPKYDDTTGITSKASVSFQARRKRPSTSPASR
RSRIEHRQGMIPQAQPHGKHSRDTISPQVKTMKAMSPMMKTPHYSTKIVSVIQVKNSPTR
THINLLMLVIHRRCTAHLAGQIVYHSMNQSILKSTIPTTNSLQVRGDSSMRNL
Nucleotide sequence
Length: 2,154
>Cisavi.CG.ENS81.R0.1689792-1701466.15652.t
AAATTACCAGATTTTATCAAAACCAAATTGATGTAAAGGAGTTGGAATATACTGTTGAAA
TCAACACACCACCAAGAATTTGAAATTTTCAGAATATTGTTGAAATCAAGATGATTTTAA
GGTTTTTTCTCAAACTTGGGATTTGGATTGTACTAACTATGTTGTCACTGTATGATGGTG
CTGCAAGTAACAATGTAATTCAAGGAAACACTGCAAGTATACCATGCTATAATCCACAAG
TTGCGTCCTCCTTCAGTAATGATGTGCTTGTTAAAATACAGTTCAAAACTGATGAAACCT
CTCCAACGTTACTAGTTGCCCATTATAAGCCTTCATCAGGCAGACCCCCAGTGGTTTTTG
CTAATTCCTACAACACAAGATTAGTCTTTACCAGCACTGGGCAACTTGAAATAAAATTCG
TTGGTTTGCGAGATGAAGGAATATATGAGTGTGTGGTTGAGATTTATAGTCAGTTACCAA
CTTCGCTAACTACACCACTTGTTGTGTTTGTTGCCCCGGAGTATGAGGTGAAGAAAGTAA
ACAACCCGCTAGTTGTCGGCAATCCTGGGATGATTGTTAACGCTGCTACTTGTGAAGCTC
GCAGCGGCAAACCTCAGGCTGATGTATCATGGGGAACAATTCGCCATTTAGATTTTGACC
AGACTCTTACAAACAGTAGTACATCTCCTCAACTAACCACCACAATATCCACCTTGCACA
TTGAACCGACAAAGTTTTACAACAAACAGTCATTTTACTGTGAAATTTCCCACCCTGCAC
TACCAGCCACTGTTAGACAAACCATATTTCTTAATGTCACATACAGCCCTGAAACCCCTG
TTATCACTGTATCGGAGGATGGATCGAGTCTCACATGTGCAGTCGATGCTAACCCTCCTG
CAAGCATAAGTTGGCAACTACCCCCATCGGCACCTTCAGCGACTTTCAACGGACCTACCG
TTGTTATGACTTCACCAAATACCCCAGAAAACTCAAACGACACTTATATTTGCATAGCCA
CCAATGGTGTTGGACAGCCAGCTCGAAACAGCATCACAGCTAAAAAAGCATCGAACATAA
TAATAATAACCAAAGAAAGCAATGTTGGAGTTATCATTGGAGCTGTGATTGGTAGCCTTG
TGTTTCTTGCTTTGATTATTGCTGTTGTATATTTCTTCCTAATCCGACCATCAAGGGAAA
AGGACACTGGTCCGTATGAACAAACCATTTCACCATTTAAACCAGATGATGGCAGTCGGC
AGTCAAGTGTACGCATGGGGTCCACACATCGTCCGCTCATCGAGCATGCGAATGAGAGTC
TAAACAAGAATCGCCCCCCGAGCCCCAACCAACCCCCACCCGACGATGCGCATGAGAGCG
GGTCAAGCGATTCGGATTCGAGCGAGGGTAACCATGACGTTGACCTTGAAGTTGACCCCA
CCACGAACCTGGTTGACCCCAAGTATGATGACACAACTGGCATCACAAGCAAAGCATCTG
TCAGTTTCCAGGCCCGTCGCAAACGACCAAGCACGTCACCCGCATCTCGTCGTAGCAGAA
TCGAGCACAGACAAGGGATGATTCCCCAAGCCCAGCCCCACGGCAAACACAGCCGAGATA
CGATTTCCCCCCAAGTGAAGACTATGAAGGCAATGAGCCCCATGATGAAAACCCCCCACT
ACAGTACGAAGATCGTCAGCGTTATCCAAGTGAAGAATTCTCCGACCCGTACCCACATCA
ACCTGCTTATGTTGGTTATCCACCGGAGGTGCACCGCCCACCTCGCAGGACAGATAGTCT
ACCACAGTATGAACCAAAGTATTCTGAAATCGACCATTCCAACTACAAACAGCCTACAGG
TCAGAGGCGACAGCAGTATGAGGAACCTGTAGAATATGCACAGATAAGACATGGCTACTC
TCATGTAGTGTAAAGAAATCCAGAACTTCTTTTTGTCACTTTGCAATTTTGGGGAAGTGA
ACTTTTTAAGAAAGTGTATGTTTCCAAAACTTTTTTAGGGAAGTGTATGTTTCATATCTG
GTCCGCTGACGAAAACTGTGCTGCTCAGTGTGCTTTGGAAAAGAATGCAGCAAAACTATT
ATTATATCATATCCTTTCAAATATTGGTTAAATAACTTACATTTGACCAACACA
| Gene3D |
Ig-like_fold (IPR013783) - T[25-144] 6.6E-8 - T[148-238] 2.1E-15 - T[239-318] 1.8E-7 |
| Pfam |
Ig_V-set (IPR013106) - T[28-122] 5.8E-6 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[28-137] 1.63E-6 - T[160-240] 1.15E-7 - T[237-309] 2.45E-7 |
| PANTHER |
Nectin-2 (IPR033318) - T[31-373] 2.7E-41 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[136-229] 8.502 - T[240-316] 9.373 |
| Pfam |
CD80_C2-set (IPR013162) - T[155-224] 9.8E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NECT3_HUMAN | 22.762 % | 85.9 | 1.3E-17 |
