- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1249146-1254651.14633.t
Possible name(s)
NR1I2; THRA; VDR
Gene model
Location
R0 [1,249,145 / 1,254,651]
Amino acid sequence
Length: 253
>Cisavi.CG.ENS81.R0.1249146-1254651.14633.p
MATADSPTKELPKETSQQKSTNENPTTTADAKKICVVCTDTATGKHFGAITCEGCKGFFR
RSVKKNATFTCSFENSCTINKNSRKHCQACRFNACLSAGMKTSLILSDEEVNKKRDLIRI
NRERRMEQQNQKKNEMEEQRLKKLQEIGDKEPQPTRMTMDEKLLVETLLKGHHDSYDFKY
DEYDTFRGREQITAPEKAPSSPKTSLAWLVASLSQNQDMQAEYAAMGENPEKSGQKELEP
EQTDSTETTEPQI
Nucleotide sequence
Length: 798
>Cisavi.CG.ENS81.R0.1249146-1254651.14633.t
ATTAAACATCAGATCAACAGTTGTAAACTGTGAAAAAATGGCTACTGCTGACTCACCCAC
AAAAGAACTGCCAAAAGAAACAAGCCAACAAAAATCTACAAATGAAAATCCAACTACCAC
TGCTGATGCTAAGAAGATTTGTGTGGTTTGTACGGACACCGCAACCGGGAAACATTTCGG
GGCAATCACATGTGAAGGCTGTAAAGGGTTCTTTCGCCGTTCAGTTAAAAAGAATGCCAC
CTTCACCTGCTCATTTGAAAATAGCTGTACGATTAACAAGAACAGCCGAAAGCATTGCCA
AGCTTGCAGATTTAACGCCTGTCTGTCTGCAGGAATGAAAACATCCTTGATCCTGAGTGA
TGAGGAGGTTAACAAGAAGAGAGATCTGATCCGGATCAATAGAGAGCGGAGGATGGAACA
ACAGAATCAGAAGAAAAATGAAATGGAGGAGCAGAGATTGAAGAAGCTTCAGGAAATTGG
TGACAAGGAGCCACAGCCCACCAGGATGACGATGGATGAGAAATTGTTGGTGGAAACACT
GCTGAAGGGCCATCATGACAGCTACGATTTCAAATATGACGAGTACGACACATTTAGAGG
AAGAGAGCAAATCACAGCACCAGAGAAAGCACCGAGCTCGCCGAAAACCTCCCTCGCGTG
GCTGGTGGCTTCATTATCACAGAACCAGGATATGCAGGCAGAATACGCTGCTATGGGGGA
AAATCCTGAGAAATCAGGGCAAAAAGAACTGGAACCTGAACAGACAGATTCCACGGAAAC
CACAGAGCCACAAATTCC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[25-146] 6.8E-32 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[32-103] 2.6E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[32-107] 19.112 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[34-101] 4.1E-28 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[35-51] 1.0E-16 - T[51-66] 1.0E-16 - T[84-92] 1.0E-16 - T[92-100] 1.0E-16 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[35-61] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 40.506 % | 134 | 1.1E-36 |
| THA_HUMAN | 46.341 % | 115 | 1.22E-29 |
| NR1I2_HUMAN | 34.682 % | 115 | 1.11E-29 |