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TRANSCRIPT CARD

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  1. Region 'REG00001352' > 
  2. Transcript 'Harore.CG.MTP2014.S9...' > 
  3. Clone 'cilv001m07' > 
  4. Transcript 'Boschl.CG.Botznik201...' > 
  5. Transcript 'Boleac.CG.SB_v3.S23....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S23.g05441.01.t

Possible name(s)

GJA3; GJA8; GJC1

Gene model

Boleac.CG.SB_v3.S23.g05441

Location

S23 [375,110 / 382,465]

Sequences

Amino acid sequence

Length: 450

>Boleac.CG.SB_v3.S23.g05441.01.p
MSWHFIERWLQKVNQHSTLIGKFWITFLIVFRIVVVSSVGDRVYSDEQSEFKCNTGQVSL
KIILRDHPVRIFRRYDSQLHPDQDHDDCLSPSVTQNHFVVWKAFTPNEAPGCGNICFNQF
SPISHIRFWSFQIIMVCTPSIIFMVYSAHHTKRKGGKEKAASRNSPVSPVSWFTIILSSI
GRLDISLEMFEVGIAAHDPRKKAKKKDGDDGKWGTTEHRALYGVTVFLRTVLEVLFIILQ
HPLSLSHILQYRLFGLRIPSLYKCEGFPCPNKVDCFVSRPMEKTIFLWFMLIIAVISFTL
NIMEMYYMVVMWAAGGHQSGCCTKKKRYLSGMSNITIHDAKIVDGGIVAQRNAPPDYGRI
GEDFNPEQFMPAMAYMKNPPMAISVSLDQALAEQVGNHPSXKLIGPSAPLRGRDLLVSNP
SLDQSYANLKRPDQRSMKNGKKGNDYYDYV

Nucleotide sequence

Length: 1,350

>Boleac.CG.SB_v3.S23.g05441.01.t
ATGTCTTGGCATTTCATTGAAAGATGGCTTCAAAAAGTGAATCAGCATTCCACCCTGATC
GGGAAATTCTGGATTACTTTTCTCATCGTATTTCGAATTGTAGTTGTCTCCAGTGTAGGA
GACAGGGTGTATTCAGATGAACAGAGTGAATTTAAATGTAACACAGGGCAGGTAAGCTTG
AAAATCATTCTACGCGATCACCCAGTCAGGATCTTCCGGAGGTATGACTCCCAACTTCAT
CCCGATCAAGATCATGATGACTGCCTCTCGCCTTCCGTCACTCAAAATCATTTTGTAGTT
TGGAAGGCTTTCACACCTAACGAAGCCCCTGGATGCGGCAACATTTGTTTCAATCAATTC
TCACCTATTTCACATATACGATTTTGGAGCTTCCAGATTATAATGGTGTGTACACCTTCC
ATTATATTCATGGTCTATTCCGCTCATCACACGAAAAGGAAAGGTGGAAAAGAAAAGGCA
GCAAGTCGTAATTCACCGGTCTCACCAGTAAGTTGGTTCACGATAATCTTATCTTCGATA
GGAAGACTTGACATAAGCTTAGAGATGTTCGAAGTTGGGATAGCAGCACACGATCCACGG
AAGAAAGCGAAGAAAAAAGATGGTGACGACGGCAAATGGGGGACAACGGAGCATCGTGCA
CTGTACGGAGTGACGGTTTTCCTTCGAACAGTACTTGAAGTTCTCTTCATCATATTACAG
CATCCACTTTCACTATCTCATATTTTGCAGTATCGCCTCTTCGGATTGCGCATTCCAAGT
TTGTACAAATGCGAGGGGTTTCCTTGTCCGAATAAGGTTGACTGCTTTGTGTCAAGGCCG
ATGGAGAAAACCATATTTTTATGGTTCATGCTTATCATTGCCGTCATTAGTTTCACGCTG
AATATCATGGAGATGTACTACATGGTTGTGATGTGGGCGGCCGGAGGACATCAAAGCGGA
TGCTGCACGAAGAAGAAAAGGTACTTGAGTGGAATGAGCAACATCACAATTCATGATGCA
AAAATAGTAGACGGTGGAATCGTTGCACAGCGCAATGCCCCGCCTGACTACGGACGAATA
GGTGAAGACTTTAACCCGGAACAATTCATGCCAGCGATGGCTTACATGAAGAATCCACCT
ATGGCTATCAGTGTTAGTTTGGACCAGGCATTGGCNGAGCAAGTAGGAAATCACCCGTCG
NCCAAGCTTATCGGCCCATCAGCGCCACTTAGGGGCCGTGATCTTCTTGTGTCAAATCCA
TCTTTAGATCAATCATATGCAAATTTGAAACGCCCGGATCAACGAAGTATGAAAAATGGT
AAAAAAGGAAATGATTATTACGATTACGTT

InterProScan

PANTHER
Connexin (IPR000500) - T[1-58] 6.9E-88 - T[108-314] 6.9E-88
Gene3D
Connexin_N_sf (IPR038359) - T[1-71] 7.2E-20 - T[102-319] 1.9E-48
Pfam
Connexin_N (IPR013092) - T[2-58] 2.9E-21 - T[108-309] 2.3E-54
PRINTS
Connexin (IPR000500) - T[20-44] 2.8E-6 - T[51-73] 2.8E-6 - T[172-195] 2.8E-6
SMART
Connexin_N (IPR013092) - T[42-73] 2.6 - T[99-127] 0.025
SMART
Connexin_CCC (IPR019570) - T[232-308] 4.5E-31
ProSitePatterns
Connexin_CS (IPR017990) - T[264-280] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CXA8_HUMAN 31.715 % 160 1.83E-44
CXA9_HUMAN 31.29 % 150 2.93E-40
CXA3_HUMAN 29.393 % 152 1.57E-41