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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S4...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S3...' > 
  4. Transcript 'Cisavi.CG.ENS81.R91....' > 
  5. Transcript 'Boleac.CG.SB_v3.S229...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S229.g05387.01.t

Possible name(s)

EDC4; SLK; WDSUB1

Gene model

Boleac.CG.SB_v3.S229.g05387

Location

S229 [148,557 / 165,651]

Sequences

Amino acid sequence

Length: 1,451

>Boleac.CG.SB_v3.S229.g05387.01.p
MSLTPYARPKMDGAASTDGAAESITSTLKDMLKINGSNEDQDEQSSSTPVKDAATEQKAE
EEDNESKKDESEVESAASSPPRNFGGPQKIDLSKVGDGECVRISSDDVTVVTSPAFEKDN
ENGSGSNKVRIKPITKFEWEHKYYNGSLVSVTENFIAYAIKSRSNAVRVISRKNSSNRLL
LKGFMAPVCDIAFAHSTSTLVAAVDENGTLFVWDLCQIGDTTDAKKKLHVKCDFNDSTYH
RVVWLTFMHCDIDGVNTEQIMQLDEAGDLDPSMCKRLLAVSHGKDVEIWDVHAAFAIAED
DDQETDKSKLSETFMTVSHDDIITDCVLSPEGSVIAVASNDGYVKFWQIAADTSEPPSCL
HKWKPHDDKPVSLVTFCDDRTQAQLILYWRFMLTGCCQNSELKIWCTVSWDCLQKISFLP
TPGSNEISPSLKCVLHAAADYLVVADINRNVVYVLHCNTDIENEKASLTSISQYLLTAPI
LSFAFIGAQKCKFKPLVAMDGEGDEEDQDQDDDEDDDDDDVGSFLWITLYFYFRSLESLD
IRFVPNTLPDESLSYSTYNTINDAINLASVDESLSGVAPSLDAIPHEEDILNPSPVPDED
DLEESQNKTGLTDAEQSTLLANNDNVEKEDDKESEGQKTPDRVPSXHTSLLDSNINDLVN
KLRPDEPPLAHSSPSVRINYDEDDNRRGQGEGEASASPPGKPDGQPVLLTPDAFFSSLRK
NDDVASIETTFTHVTPLEQVSILASERDKSLQESAAEKSPVLSSTLPAPPGFPPISNDSS
SFAPDMTRQASPPLIPAASIRSSLSNMVGQSSTSPYQSLVQPATVSDTAGPYGDNQAFGF
IAKDKSPDLISSASSIENVGSNTSEGRILIGGPLPGAVGGSGDALYLTGPSKECQDVEET
ASNSSIKSDTLPTTSSAPWPKAPDVTMSRPLLKKVASPSSRDEFLRASGRSQKSSYSARP
DAALHSDLASGDKTTTSGLSPTVGAELMETIVKLQSQQDEMMKILQKENRRTNQSAKNVE
ATLKRFEQQQNEKLDRALRSLSDSQKKFQTXMKSQSMSTSEHXTSKMERSMRNEMKSTVX
PALAKSLDPLKDQLHTTLAQKITATDYLLKENIAKLVKSRDTVDAIGTAAGRAIQSQVHT
QFKDSFLQIVVPAVEKSCSMMFQQISSTFQRGMDEGIEKLEKQLKSRVRSEVDRISAAEK
QSKEAVTELRDTATQLTSKLSGAIEKDVQKYVRSEMKRVQEQMTQEMTKLLKAQHTEALK
EQKQVLTQCIHSTMAEIQPQQQEDKFKPLSAGSTSSTPNRQTGAYKPTFEQQQQAIIAQL
QQGNLNAAFQRALSASDLALVVFVCEMVDPTVLFGSSPCALNQPIILSLIQQLSCDLSRN
MELKLKYLQEAVMNVDHTHLVTQEHLPTVMDALAKNLDSYITVLNSQPIDSANTPIIKQM
KMLSMAAKSLK

Nucleotide sequence

Length: 5,229

>Boleac.CG.SB_v3.S229.g05387.01.t
TCTTGCCTTGGATTTCGGTTCTGTGGCTGTTCGCTGTTTGCAAAGGCTGCGTCTAGTGTA
GCTCTTGTTTCGTTATTGTGTTGGTGGCTCCCTGATTGTGCTAGTTTCCAAAGAAGCAAC
ACTGATTCGCAGAAAGCATATAAACTTGACTCTATCGACAGTTTCTTTTGCAATCTGTAC
GGTAAGGAATATTTTTCACCGATGTCATTGACTCCATATGCTAGGCCGAAAATGGATGGG
GCCGCTAGTACTGATGGAGCCGCAGAAAGTATAACCAGTACTCTGAAAGACATGCTTAAA
ATCAATGGAAGCAATGAGGATCAAGATGAACAATCTTCTTCAACTCCNGTGAAGGATGCA
GCGACTGAGCAAAAAGCTGAGGAAGAGGACAATGAATCTAAAAAAGATGAATCCGAAGTG
GAATCTGCAGCTTCATCTCCGCCAAGAAACTTCGGAGGACCGCAAAAGATTGATCTGTCT
AAGGTTGGAGACGGTGAATGTGTGAGGATTTCCAGTGATGATGTCACTGTAGTTACCAGT
CCTGCATTTGAGAAAGATAATGAGAATGGCTCTGGTAGTAATAAGGTTCGGATCAAACCA
ATCACAAAGTTTGAATGGGAGCACAAGTATTATAATGGATCTCTTGTATCTGTGACGGAA
AACTTCATCGCATATGCTATAAAAAGTCGATCTAATGCTGTACGAGTGATCAGCCGAAAA
AATTCTTCCAATCGTTTACTTCTGAAAGGATTCATGGCACCAGTTTGTGATATTGCTTTT
GCTCATTCAACTTCCACTCTTGTTGCTGCAGTTGATGAAAATGGAACATTGTTTGTTTGG
GATTTATGTCAAATTGGAGACACTACAGATGCGAAGAAGAAACTTCACGTAAAATGTGAT
TTCAACGATAGCACATACCATCGGGTGGTATGGTTAACATTCATGCATTGTGATATTGAT
GGCGTGAACACTGAACAAATTATGCAACTAGATGAGGCAGGTGATCTTGACCCTTCCATG
TGCAAAAGGCTTCTCGCTGTCTCTCACGGAAAAGATGTAGAGATCTGGGATGTTCATGCT
GCTTTTGCAATTGCGGAAGACGATGACCAAGAAACGGATAAAAGCAAATTATCAGAAACA
TTCATGACTGTGTCACATGATGACATAATCACTGACTGTGTATTGTCTCCGGAAGGTAGT
GTCATCGCTGTGGCAAGTAATGATGGATACGTCAAGTTTTGGCAGATTGCTGCTGATACC
TCAGAGCCACCATCATGTTTGCATAAATGGAAGCCTCATGATGATAAGCCGGTATCACTT
GTAACATTTTGTGACGACAGAACGCAAGCACAATTGATACTTTATTGGAGGTTTATGCTG
ACGGGCTGCTGTCAGAATAGTGAACTGAAGATTTGGTGCACTGTTTCATGGGATTGCCTT
CAGAAAATATCTTTCTTACCCACTCCAGGATCTAACGAAATTTCACCATCATTAAAATGT
GTGTTGCATGCGGCAGCTGACTATCTAGTTGTTGCCGATATCAATAGAAATGTGGTTTAT
GTCCTCCATTGCAACACTGACATTGAAAATGAGAAAGCCTCATTGACGTCTATTTCTCAA
TATCTTCTCACCGCACCAATACTGAGTTTCGCATTCATCGGTGCGCAAAAATGCAAATTC
AAACCGCTCGTCGCTATGGATGGAGAAGGAGATGAGGAGGACCAGGACCAGGACGATGAT
GAAGACGATGATGATGATGACGTTGGCTCGTTCCTCTGGATAACTTTATATTTTTATTTC
AGGAGCCTGGAAAGCCTTGACATTCGATTTGTTCCCAACACTCTGCCTGATGAGTCATTA
AGCTACAGCACTTATAATACAATAAATGATGCCATAAATCTTGCTAGTGTCGATGAATCT
TTGTCGGGTGTTGCTCCTTCCCTTGATGCTATCCCACACGAAGAAGATATTCTCAATCCA
TCACCAGTGCCGGATGAGGATGATCTTGAAGAAAGTCAAAACAAGACTGGGCTTACTGAT
GCAGAACAATCAACATTATTAGCAAACAATGATAATGTTGAGAAAGAAGATGACAAAGAG
TCTGAAGGTCAAAAGACTCCGGATCGTGTGCCGAGCANGCACACCTCGTTGCTCGATTCA
AATATTAACGACTTGGTGAACAAACTGAGACCGGACGAACCTCCTCTTGCACACTCATCG
CCGAGCGTTCGGATCAATTATGATGAAGATGATAATCGCAGAGGACAAGGTGAAGGAGAA
GCAAGTGCGTCACCTCCTGGAAAACCTGATGGACAACCTGTGCTGTTAACTCCTGATGCA
TTTTTTTCATCGCTAAGAAAGAATGATGATGTCGCTTCGATTGAAACTACTTTCACACAT
GTTACTCCATTAGAACAAGTATCGATACTTGCTTCGGAAAGAGACAAGTCATTACAAGAA
TCTGCTGCTGAAAAATCACCAGTGTTATCATCCACCTTGCCTGCACCTCCTGGTTTTCCA
CCAATATCAAATGATTCCAGTTCTTTTGCACCTGACATGACAAGACAAGCATCCCCACCT
CTTATTCCTGCGGCGTCAATACGGTCGTCTCTAAGCAATATGGTTGGACAGTCATCAACT
TCTCCCTATCAAAGTCTAGTGCAGCCTGCCACAGTGAGCGACACCGCAGGGCCATACGGA
GATAACCAAGCATTTGGATTTATTGCAAAGGACAAATCACCAGATTTGATTTCTTCGGCA
TCATCAATTGAAAATGTCGGAAGCAATACTTCTGAAGGAAGGATACTGATAGGTGGACCA
TTACCTGGTGCTGTTGGTGGCAGTGGTGACGCTCTCTATCTTACAGGACCTTCGAAAGAA
TGTCAAGATGTCGAGGAAACAGCATCTAATTCATCAATAAAATCTGACACTCTGCCTACA
ACATCATCTGCTCCGTGGCCTAAAGCTCCAGATGTTACGATGTCTCGACCGCTTTTGAAA
AAAGTGGCTTCCCCTTCGAGTCGAGATGAATTTCTGAGAGCTAGCGGGAGGTCTCAAAAA
AGTTCGTATTCCGCTAGACCTGATGCGGCGCTTCATTCTGATCTAGCGTCTGGAGACAAG
ACCACAACATCAGGACTGTCACCTACTGTAGGTGCGGAGTTGATGGAAACAATCGTGAAG
CTGCAAAGTCAACAAGATGAAATGATGAAGATTTTACAGAAAGAGAACAGGAGAACAAAC
CAAAGTGCCAAAAACGTCGAAGCTACTTTGAAACGATTCGAACAGCAACAAAATGAAAAG
CTGGATCGTGCCTTACGAAGTCTTTCAGACTCGCAGAAGAAATTTCAAACTGANATGAAA
TCTCAATCAATGTCCACATCGGAACATTNCACTTCAAAAATGGAAAGATCGATGCGGAAT
GAAATGAAAAGTACAGTGNTACCAGCTTTAGCAAAATCACTCGATCCTTTGAAAGATCAA
CTTCATACAACTCTCGCTCAAAAAATTACTGCAACGGATTATCTATTGAAAGAAAACATA
GCGAAATTGGTTAAATCCAGGGATACGGTTGATGCGATCGGAACCGCAGCTGGTCGAGCT
ATACAAAGTCAAGTTCATACCCAATTCAAGGATTCGTTTTTACAAATTGTCGTGCCCGCG
GTGGAGAAGTCTTGCAGTATGATGTTTCAACAGATTTCCTCAACTTTTCAAAGGGGAATG
GATGAAGGGATTGAAAAATTGGAAAAACAGTTGAAATCCCGGGTTCGTAGTGAAGTCGAC
AGGATAAGTGCTGCAGAGAAACAATCGAAAGAAGCTGTTACTGAACTACGAGATACGGCC
ACCCAATTAACTTCTAAACTATCTGGTGCAATCGAGAAAGATGTCCAGAAATATGTAAGG
TCGGAAATGAAAAGGGTCCAGGAGCAGATGACACAGGAAATGACAAAACTTCTCAAAGCT
CAACATACAGAGGCGTTGAAGGAACAGAAACAAGTCTTGACCCAATGTATTCATTCCACG
ATGGCTGAGATCCAACCACAACAACAAGAAGACAAGTTTAAACCATTGTCGGCAGGGAGC
ACAAGTAGCACTCCGAACAGACAGACAGGGGCGTACAAACCAACTTTTGAACAACAGCAA
CAGGCTATCATAGCCCAGCTACAGCAAGGGAATCTAAATGCCGCGTTTCAAAGGGCACTC
TCTGCATCTGATTTGGCACTTGTGGTGTTTGTGTGTGAAATGGTGGACCCAACTGTACTC
TTTGGTTCTTCGCCGTGCGCGTTGAATCAGCCAATCATATTGTCACTTATTCAGCAATTA
TCGTGTGACTTGAGTCGAAATATGGAACTTAAACTCAAGTATCTTCAAGAAGCTGTAATG
AATGTTGATCATACCCACCTAGTCACCCAAGAGCATTTACCCACCGTCATGGACGCTTTA
GCAAAGAATTTGGACTCGTATATTACGGTGTTGAATTCTCAACCGATCGACTCGGCTAAC
ACTCCGATTATAAAACAGATGAAAATGCTGTCCATGGCGGCAAAGTCGTTAAAGTAGGAA
ACTGTGTTGAAACGTATTAGAATGCCGCAAACTACTAAGACAATAACCNAATGGTTATTA
GTGTAAGCAATTCTTTGTATCGATTTTAGACAGTCGTGGTATGCTGTACCTCACGGGACT
TTATTCAATTATATCCTGGTAGGTATTTTGATTCTCATTTTGATATGAACGTCTTTCTTT
TACGTGTATCGTTGATTATTGTCACATAATGTTTGGTTTTCTGGTGTTACACTTTTCGTT
TTCTACACGTCAATGTACACTTTGCTTGTCCTCAATTTGGAATGCCATTTCATACAAATT
CATAAAGTACAATTTTGTAATTTCTTGGTTTCATAATTAGCAGTATACCAGACCAGTCCA
ATCCAGAAGACTGAGCTCCAGCCCTGGTCATGTCGTACCCAAGAGTTGAAAAATGGCGTC
CACGGCTGCCCTGCCTGGTTCTGCCAAGTCGATTCTGTCTGTATTTTGGCATATTACTTA
GAAATGTTTCAGTTGTGGGTGATACAATATCATGATACTCTACATCATCTTGACTGCAAT
GTATCATCAAAGAAACAATTTATTTGCTCGTACAATTTGATGAAAATCAAGCAAAAGCAC
GCTTGCAATTGGCAAAGAATCACTGGAGAAGAACAAATCACGATACAAAAGAAATCCTCC
CAATCAAGC

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[93-479] 1.0E-20
Pfam
EDC4_WD40 (IPR032401) - T[125-459] 5.8E-87
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[131-459] 2.93E-23
SMART
WD40_repeat (IPR001680) - T[174-214] 0.12 - T[256-290] 270.0 - T[307-348] 3.6E-5 - T[356-406] 11.0
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[201-215] .
ProSiteProfiles
WD40_repeat (IPR001680) - T[316-349] 11.21
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[316-357] 10.469

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EDC4_HUMAN 34.87 % 314 1.05E-87