- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C10.558.v1...' >
- Transcript 'Boleac.CG.SB_v3.S43....' >
- Transcript 'KH2012:KH.L172.2.v1....' >
- Transcript 'Boleac.CG.SB_v3.S212...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S212.g04957.01.t
Possible name(s)
PARN; PNLDC1
Gene model
Location
S212 [31,520 / 35,629]
Amino acid sequence
Length: 692
>Boleac.CG.SB_v3.S212.g04957.01.p
MDVTRQNFQEAYDIVKKSLSDSTFVAIDGEFSGVTNSSFNITNYDSPEERYHKLRHNISD
FLLMQFGLVAFKWDAETEKYISEAFNFYIFPFRSNISGVPDRIFSCQSSSMDFLTSQRFD
FNKVFHNGIPYLRQEEEAALSNSLTEKHMMRXHNFKSPGKSMDNHIHDIRSPAASPTAIT
DPKVQXFLDGIKGKIGEFLKNSVEDDVLELEPCNSYLRKVLYETVPTMFPEPLMLEARMN
EQTKRRFLAVQRLGSEESRIQKHNEAKARDDSSLLDAVGFSRVIHLIKKSGKLVVGHNML
LDLLFTMQQFIQPLPVTLDELKALVTSTFPRIIDTKLMGSSLPFRELIPITALGELHNRL
GEKPFTFPAIVPPEKYESANSNQTIEVNLHEAAYDAYITGRSFLAMXNFLVSLKPKGVEC
NEFSNGSLEIISPYLNKVFLMRSSDIPYLNMSGSDLSPSRSHVFHVQFPIAWKASDIRML
FSPVTNSIYISWINDTQCFVALPDKNQAKQVKKLLIKPVGMESSPYVIRTXEEYQREVAG
QVFSTPTWRPSYNTTPYSKNKVWRPPAXASSSNQSQANASTSNSANNNNTPKSTVTSXKR
SGEDAAVAKPSSVRRISSTSNRIGSLDLGEPDLKRRVVDFLNEASSSGIPVSHSTAKTDI
PVLVAPEKNDEADSDSARKKSVEMFEIPDWNK
Nucleotide sequence
Length: 2,308
>Boleac.CG.SB_v3.S212.g04957.01.t
TTGTTTCAGATTATAGTAATAGTAAATAATGGATGTTACCAGACAAAATTTTCAAGAGGC
TTATGATATTGTGAAAAAAAGCTTATCAGATTCGACTTTTGTTGCGATAGACGGTGAATT
TTCTGGAGTTACCAATTCTTCATTCAATATCACGAATTATGACTCCCCTGAAGAAAGATA
CCACAAACTACGGCACAACATCTCNGATTTTCTTCTAATGCAATTTGGTCTTGTTGCTTT
CAAGTGGGATGCGGAAACTGAAAAATACATATCCGAAGCATTTAATTTTTATATTTTTCC
ATTTCGATCAAACATTTCAGGCGTTCCTGACAGGATCTTCTCCTGTCAAAGTTCCAGTAT
GGATTTTCTCACTTCTCAACGGTTTGATTTCAATAAAGTTTTTCACAACGGGATTCCGTA
TCTCAGACAAGAAGAAGAAGCTGCTTTGAGTAACTCATTAACTGAAAAGCATATGATGAG
GNTTCATAACTTCAAGTCGCCAGGAAAAAGTATGGATAATCATATCCATGACATAAGAAG
TCCTGCTGCCAGTCCGACGGCGATAACAGATCCCAAAGTTCAANTGTTTTTGGATGGAAT
AAAAGGGAAAATTGGAGAATTTTTAAAAAATTCTGTTGAGGACGATGTACTGGAACTGGA
ACCGTGTAACAGTTACCTCAGGAAGGTTCTTTATGAGACGGTACCTACCATGTTTCCTGA
GCCATTGATGCTNGAAGCTCGAATGAATGAGCAAACGAAACGAAGATTCTTGGCAGTACA
ACGTTTAGGAAGTGAGGAAAGCCGGATTCAAAAACATAATGAAGCTAAGGCAAGGGATGA
TTCTTCACTTTTGGATGCAGTTGGCTTTTCAAGGGTGATACATTTAATAAAAAAGAGTGG
GAAACTTGTTGTNGGACACAACATGTTATTGGATCTTCTTTTTACTATGCAGCAGTTCAT
TCAGCCACTGCCCGTTACACTGGATGAGCTGAAGGCCTTGGTGACGTCAACATTTCCTCG
CATTATTGACACAAAACTGATGGGGAGCTCACTGCCATTTCGAGAACTTATACCTATTAC
TGCACTTGGTGAATTGCACAACAGACTTGGCGAAAAGCCCTTTACATTTCCTGCCATTGT
TCCTCCAGAGAAATACGAATCTGCCAACTCTAATCAAACTATTGAAGTAAATCTGCATGA
AGCAGCCTATGATGCTTACATCACAGGAAGGTCCTTCTTGGCCATGTTNAATTTCTTGGT
ATCTTTGAAACCAAAGGGCGTGGAATGCAATGAATTTTCTAACGGCTCATTGGAAATCAT
ATCTCCTTATTTGAACAAGGTGTTTTTGATGAGAAGCTCTGATATTCCATACTTGAATAT
GAGTGGAAGTGATCTATCACCTTCTCGTTCTCACGTCTTTCATGTGCAATTTCCTATTGC
GTGGAAGGCTTCTGACATTCGGATGCTGTTCTCACCTGTGACNAATTCAATTTATATATC
ATGGATCAATGACACGCAGTGCTTCGTCGCATTGCCTGACAAAAACCAGGCAAAACAAGT
CAAAAAGCTACTGATAAAACCAGTGGGTATGGAATCAAGTCCTTACGTTATTAGGACTTA
NGAGGAATACCAACGAGAGGTGGCTGGTCAGGTGTTTTCTACGCCGACGTGGAGACCAAG
TTACAACACTACTCCATACTCNAAGAATAAAGTATGGCGACCGCCAGCTANTGCTAGTTC
GTCTAATCAGTCGCAGGCGAATGCGTCNACCTCAAACTCTGCTAACAATAATAATACTCC
NAAGTCAACTGTAACTAGTNGAAAACGCTCAGGGGAAGATGCGGCGGTTGCAAAGCCTTC
TTCAGTACGCAGAATTTCCTCCACTTCCAATCGAATTGGTAGCCTTGACCTCGGTGAACC
AGATTTAAAACGNCGTGTCGTTGACTTTTTGAACGAGGCATCTTCCAGCGGTATTCCAGT
TTCTCACTCTACAGCTAAAACAGATATTCCTGTACTTGTAGCTCCAGAAAAAAACGATGA
GGCGGATTCCGATTCTGCCCGAAAAAAATCTGTCGAGATGTTTGAAATCCCTGATTGGAA
TAAGTGATTTTTTAGGTTGGTATAGCCAGGACCAACAATTGTCGTTAGGCACTGTAAAAT
CATTCGTAGCAAGTGATGCTTAGCTGTCACCGCCAACACGGCTTCTAAAATCTACTGTNA
ATAAATGATGACCCCATGATCGAATATATTGCTTTTGTTATACTCTTATTTGCCATCCTA
GGTAACAGGTTAGTAAAAAGTAGTGATG
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[1-133] 8.1E-56 - T[277-410] 8.1E-56 |
| Pfam |
RNase_CAF1 (IPR006941) - T[3-403] 1.0E-79 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[179-259] 8.24E-14 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[447-514] 1.79E-5 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[448-544] 5.2E-22 |
| Pfam |
PolyA-riboNase_RNA_binding (IPR014789) - T[453-535] 3.3E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PARN_HUMAN | 45.269 % | 425 | 1.44E-140 |
| PNDC1_HUMAN | 28.446 % | 142 | 5.83E-36 |