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- Transcript 'Boleac.CG.SB_v3.S201...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S201.g04688.01.t
Possible name(s)
YBX1; YBX2; YBX3
Gene model
Location
S201 [59,948 / 66,462]
Amino acid sequence
Length: 328
>Boleac.CG.SB_v3.S201.g04688.01.p
MSDAIVTTETVSVDDVKSEKKVLATHCTGVVKWFNVRNGYGFINRDDNKEDVFIHQTAII
RNNPRKYLRSVGDGEIVEFDVVEGEKGLPEAANVTGPDGVPVQGSKYAADRRRYRPQYRR
RPRNALGPRRDNTTQEGGTREGDEGGDEQQQNPPPPRRYRRRPPWFRNRRPRRPIEDGEN
QEGDQKEDVEENGEQQRPRRQRPRRPRRPRPPQDGEGGSEEQGEGKVNGDGDEAGERPPP
PRRRRYRPRRPQGQNQSEGEVPESKEGMEQEQNDENKRPPPRRRYNRPRRPKGPRAVKSE
GESEISKEAPAQNGVAEHPTNGVIEASA
Nucleotide sequence
Length: 2,087
>Boleac.CG.SB_v3.S201.g04688.01.t
TATTTTTTCTCTCGCTTTCAAACGGCGATTCTCGATGACGTGAACGGGCCGCGCTTTCTA
CCATTAACATCAAGTGACGCTGAGGAGTGAGCGTGCAAGGAAATAAGGCTTAGCGGGGAT
CTTATAACATCGCCCTTAAAAGACGTCAGAACATCATGTCGGACGCCATTGTAACCACAG
AAACTGTCTCGGTAGACGATGTAAAGTCCGAGAAGAAAGTACTCGCTACACACTGCACAG
GTGTTGTGAAGTGGTTCAATGTTCGTAACGGTTACGGATTTATCAACCGTGATGACAACA
AGGAGGATGTATTCATTCATCAAACAGCTATCATTCGCAACAACCCACGCAAGTACTTGC
GCAGTGTTGGGGATGGTGAGATTGTGGAGTTTGATGTGGTTGAAGGCGAGAAGGGCCTTC
CCGAAGCTGCTAATGTAACTGGACCGGATGGTGTCCCTGTCCAGGGCAGCAAATATGCAG
CTGATCGTCGAAGATACCGTCCACAGTATCGTAGGCGTCCGAGGAATGCCTTGGGACCGC
GACGTGACAACACCACACAAGAAGGTGGTACGAGAGAGGGGGATGAAGGTGGGGATGAAC
AGCAGCAAAATCCACCCCCGCCAAGAAGGTACAGAAGACGTCCCCCATGGTTCAGAAATA
GACGTCCCCGTCGTCCAATCGAGGATGGAGAAAATCAAGAAGGTGATCAGAAAGAGGACG
TTGAAGAGAACGGGGAGCAACAGCGTCCACGAAGACAACGACCACGTCGTCCTAGAAGAC
CAAGACCCCCTCAGGATGGTGAGGGCGGCAGTGAAGAGCAAGGAGAAGGCAAAGTGAATG
GAGATGGAGATGAAGCTGGAGAGCGACCCCCTCCACCGAGAAGACGCAGATATCGCCCAC
GCCGTCCCCAGGGTCAAAATCAGTCTGAAGGCGAAGTGCCTGAGAGCAAAGAGGGCATGG
AACAAGAGCAGAATGATGAAAATAAGAGACCACCTCCTCGCAGACGATATAATAGGCCAC
GTCGTCCAAAGGGCCCAAGAGCAGTAAAATCAGAGGGGGAGAGTGAAATTTCCAAGGAAG
CACCGGCTCAAAATGGAGTTGCTGAGCACCCCACCAATGGGGTCATTGAGGCATCAGCAT
GAAGCATGTTGGATCGTATTTACCCCTCCTCATGAACGCTAGCTTGCAAAGACAGTTGAA
ACAGTTAGAAGTGTTATTTGCTTTACCATCTTGATCAGTAATCGTTGATTTGCTAGGTGA
TTTTTCATGGGTTGCGGGTTTAAAATTTGGTTAATGCTACCTTAGCATTTCCCCACCTAA
TGCATACTCCTCTAGACAGGGTCTGTTCACGCAAACTTATGGTGCCACCTGCTTTTTGTA
TTGATTTTTGTAGTGAGTTTATTCAACACCTGAAGTGAAATCTAGCTATATATCCGCTCG
CTCGTGATTGACCAATCCAATTCAATGGTCCATAATTTGAGATTTTCCCAACCATTTCAA
ATTGACAATCGAACGCGACAGAACTATAAAAACTGCTAGTATTGACCTTGACTTTTTTGC
ATGATTGTAGCCTGTAACATCGATAGGTTGATAATATTGAAAACATTAGATCATTATTAG
TTGTGAAGCTTCTTAGATTGCAGCACAGAAGGTGTTATTATACTACTGAAGCATTTGCTT
GAACTTAGAAGTTCGTACCAACTGTCATATACTAAGTGGTTCAATTGCTGTCGTTTTGAA
CTTACGTAAAATATGTTCCCATTGGGTGTGGCGGTTTTCGATCTTGATTTGTAACAATTC
TGAGCATCCTGTACCAAAGATTTATCTTCCTATTTATTTTCCTATTCAAAATTACTGGTT
GCTTTCTCCACTGTAGGTAATAATAACTTGAGGTATACTGATGTTGCTGTTCATTTGGCT
GCTGTGCCACGTTTCTCTTTGTTATTGTTCCCCATTTTTGAGTAAGCGACTGTCATGGGA
ATAGGCTTCTATATCTAATTCGTCGCCGTTTTTTGCTTGGGTTTGCTCTTAATTTGATAT
TTTGCAAATTTAAGACGCGTACGATCAATACAGCCTATGGGAACGTA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[23-96] 1.46E-20 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[27-96] 4.2E-23 |
| CDD |
CSP_DNA-bd (IPR002059) - T[27-96] 8.50427E-21 |
| SMART |
CSD (IPR011129) - T[28-97] 4.4E-21 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[29-44] 4.2E-19 - T[50-59] 4.2E-19 - T[69-87] 4.2E-19 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[40-59] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| YBOX1_HUMAN | 83.696 % | 164 | 1.96E-48 |
| YBOX3_HUMAN | 83.871 % | 164 | 8.72E-48 |
| YBOX2_HUMAN | 53.684 % | 159 | 4.42E-46 |