- Transcript 'KH2012:KH.C14.151.v1...' >
- Transcript 'Moocul.CG.ELv1_2.S10...' >
- Transcript 'Boleac.CG.SB_v3.S198...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S198.g04493.01.t
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
S198 [168,721 / 176,408]
Amino acid sequence
Length: 800
>Boleac.CG.SB_v3.S198.g04493.01.p
MFWPGMYRQGVIREVEVVDGNDNVLLTQEPSSGKVSRSQICGVWRNLPRSILNALESDNL
SMKVLVKTSLLKSWNKSHNNSTLNAEYLNTFALGKIRSHRALAEETFSSILTMESKEDVK
SKGGAAVVITLAKNFKQIDFVVLHRNVAPENNRKRKANHPLYMKLELRNNKNETLRKTDV
RISDKRDEVADSWNANAALLRLLGEGSLHIALEAREGRRGQVGRYVGKITTRATCDLIQA
VISGNNCDPAKATGSVGSAMIQINADNTVSYKMIFSEMKSKVRSLQFRAFYRKRTRVIAD
VTAQFRNGEASGVMREISARENGGSWITVSTDLHPHCEIQGNIVSLLYNRDSARYTATPI
PLAGCYVSPPVSTGAGGHAWLHLDHNCTLHYEIVVSGLSKDVDSTVNAHLHGLAEISGME
LTHKKLLKGFYGTEARGILRDIPNELYQLMNDGTAFVQVATKRNPTGEIRGKVYIPNSCV
QSGIQKIVSKDLDERQSKKMSHGSCHFEGKWYAHDTQWVPDYDKLCTTCSCWRGRATCQP
VSCPSTDCFYPVVMESECCPACQDSPPPFTGKSNEGSYSIASLHPSDGIRRNVNTDRGNV
NTDRRSRYNPRGFRHQVRDGCYQDGDQILHPRGTSWNPIVAPFGRIACVSCTCHENNEHS
CERIKCPPTTCSHPKRKKPGDCCKTCEVSPEAYFNPSNRAVFGELRASVNPFVTVSASDN
PRQPTNVETGRSLPRIGWMRDGSSRVRMCSFGEDLHPVGSSWKPKAFGLGEVRCIICTCQ
VDSKNDMVAKCKRQCPIDNE
Nucleotide sequence
Length: 2,403
>Boleac.CG.SB_v3.S198.g04493.01.t
ATGTTTTGGCCAGGGATGTATAGGCAAGGAGTAATTCGTGAAGTTGAAGTCGTGGACGGA
AATGATAACGTGTTGCTTACACAAGAACCAAGTTCCGGAAAAGTTTCTCGATCTCAGATC
TGCGGGGTTTGGAGAAATCTTCCAAGAAGTATCCTCAACGCCCTTGAAAGTGACAACCTG
TCAATGAAAGTCCTTGTCAAGACGTCGCTGTTGAAATCCTGGAACAAATCTCACAACAAC
AGCACTCTCAATGCTGAATATCTCAACACATTCGCTCTTGGCAAAATTCGTTCTCACAGA
GCTCTTGCAGAAGAGACGTTTAGTTCGATTCTGACAATGGAATCTAAGGAAGACGTAAAA
AGCAAGGGCGGCGCAGCTGTGGTCATTACATTGGCGAAAAATTTCAAACAAATAGATTTT
GTTGTTCTTCACAGAAACGTTGCACCAGAAAATAATCGCAAACGGAAGGCAAATCATCCA
CTATACATGAAGTTGGAGTTACGGAACAACAAGAATGAGACTTTGCGAAAAACTGACGTT
AGAATTTCAGATAAGCGTGACGAAGTAGCGGATTCTTGGAACGCAAACGCTGCGCTTCTG
AGATTGCTTGGTGAAGGGTCCTTACATATTGCACTGGAAGCTCGTGAAGGAAGACGTGGA
CAAGTAGGACGATACGTCGGCAAAATCACGACTAGAGCAACCTGTGATTTAATACAAGCC
GTTATATCTGGAAACAACTGTGACCCGGCCAAAGCAACTGGCTCTGTTGGCTCAGCTATG
ATTCAAATCAATGCGGATAATACAGTGTCATATAAGATGATTTTCTCAGAAATGAAAAGT
AAAGTGAGATCGCTGCAATTTCGGGCGTTTTACCGAAAACGGACCAGGGTTATTGCTGAC
GTCACCGCTCAATTCCGAAATGGTGAAGCAAGCGGCGTGATGAGAGAAATATCCGCACGC
GAAAACGGAGGATCGTGGATTACAGTTTCCACTGATCTCCATCCTCATTGTGAGATACAA
GGAAATATTGTTAGTCTGTTGTACAACCGAGATTCAGCAAGATACACAGCAACACCAATT
CCTCTCGCTGGTTGCTACGTTTCACCACCAGTTAGCACGGGAGCAGGAGGACACGCATGG
CTGCATTTGGATCACAACTGCACTTTACATTATGAGATAGTTGTGTCCGGTTTGAGCAAA
GACGTTGATTCCACCGTCAACGCGCATCTTCACGGCTTAGCTGAGATTTCCGGAATGGAG
CTAACTCATAAAAAACTTCTCAAGGGATTTTATGGAACGGAGGCACGAGGTATCCTTCGT
GATATACCGAACGAGTTATATCAACTGATGAACGATGGCACAGCTTTTGTGCAGGTCGCT
ACCAAGAGAAACCCTACAGGAGAAATAAGGGGCAAGGTGTACATACCGAACTCTTGCGTG
CAATCTGGGATTCAGAAAATAGTTTCGAAAGACTTGGATGAAAGGCAGAGCAAGAAAATG
AGCCACGGTTCATGTCATTTCGAAGGCAAATGGTATGCACACGACACTCAATGGGTTCCG
GACTATGATAAGTTGTGTACGACATGTTCTTGTTGGAGAGGTCGGGCAACTTGTCAACCG
GTATCATGTCCATCGACTGACTGCTTTTATCCGGTTGTTATGGAATCCGAATGTTGTCCA
GCATGTCAAGACAGTCCGCCTCCCTTCACTGGCAAATCAAATGAAGGATCATATTCTATA
GCATCTCTTCATCCGAGCGATGGCATCCGGCGTAACGTAAATACTGATCGTGGTAACGTA
AATACTGATCGTCGTAGCCGGTACAATCCTAGAGGGTTTCGACATCAAGTTCGTGACGGT
TGTTATCAAGACGGTGATCAAATATTACACCCAAGGGGTACGTCATGGAACCCAATCGTT
GCACCGTTCGGAAGAATTGCTTGTGTGTCTTGCACTTGTCATGAGAATAATGAACACAGT
TGCGAACGAATCAAATGTCCACCAACAACTTGCTCTCATCCAAAGCGGAAAAAGCCTGGC
GACTGTTGTAAAACTTGTGAAGTCAGTCCGGAAGCTTATTTTAACCCTTCAAATCGAGCC
GTGTTCGGAGAACTTCGGGCGTCTGTTAACCCGTTCGTCACAGTTTCAGCATCAGATAAT
CCTCGACAGCCAACGAATGTTGAAACGGGGAGATCTTTGCCAAGAATCGGTTGGATGAGA
GACGGGAGCAGCAGGGTTAGAATGTGCTCATTCGGAGAAGACTTGCACCCGGTCGGTTCT
TCATGGAAGCCAAAAGCATTCGGACTTGGAGAAGTGAGATGCATAATCTGCACTTGTCAG
GTGGACTCTAAAAACGACATGGTTGCCAAATGTAAAAGACAATGTCCAATAGATAACGAG
TGA
| ProSiteProfiles |
CHRD (IPR010895) - T[103-231] 12.289 - T[234-348] 5.943 - T[354-478] 21.373 |
| SMART |
CHRD (IPR010895) - T[236-345] 1.9E-6 - T[356-475] 3.6E-26 |
| Pfam |
CHRD (IPR010895) - T[367-473] 1.0E-18 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[503-563] 10.826 - T[619-687] 9.389 |
| Pfam |
VWF_dom (IPR001007) - T[505-562] 2.0E-7 - T[627-686] 1.6E-7 |
| SMART |
VWF_dom (IPR001007) - T[505-562] 2.9E-6 - T[621-686] 9.0E-4 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[526-562] . - T[648-686] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 28.696 % | 300 | 7.58E-89 |