Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Region 'REG00000662'
  2. Region 'REG00001594'
  3. Transcript 'Haaura.CG.MTP2014.S6...'
  4. Transcript 'KH2012:KH.C12.26.v1....'
  5. Transcript 'Boleac.CG.SB_v3.S188...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S188.g04172.01.t

Possible name(s)

TRIM2; TRIM21; TRIM56

Location

S188 [156,685 / 171,893]

Sequences

Amino acid sequence

Length: 539

>Boleac.CG.SB_v3.S188.g04172.01.p
MGERNPIQCSICLEELKDPRILPCWHSACFTCILGMTQLGRGRTVACHICRSTLLFENIR
SLPNPISCRQCDSFTISPRKFPCCNCLCCSTCIKNTLEDGLTTCPNQCTPDDKYAMDDLP
LARLCSMCFTLHTEEQRQCQHFLCKRCSSALGNRSVCRDEICDPRILPCWHAACLTCILR
LTQNSSGSAVACPVCRQTLMFVNIRSLPNPINCATCEKFVMNPRXYPCCNRLSCKECIQA
TEIDGEAVCVNDCSPGARHKIDDLPAGKLCPVCFAFHTEQAHRCGHFLCQRCKSEQQSAR
CNICIAAASSPPRPVNPFAAAAAAPADPNVHHNIWQQSQTREVEIRAEYGKAWQYIMEEI
DRKLCFICDDELTDPRILPCWHASCFTCILEMTQSDFEGRAIRCRECQATLPFDNIRSLP
EPIHCAVCGHHTKDPVMFPCCTRIFCLKCVWKTRLEGCKVCEAVAGQAPEPIDPFSENAG
NIFSSNTPSTQIPNNQVDLARLQQLIRLHQLQQQQRLTKRQFSSTDFVLQHGRWYHFQC

Nucleotide sequence

Length: 1,777

>Boleac.CG.SB_v3.S188.g04172.01.t
ATGAGGAAGTGTATGCCCTCACAGTATCAGTATGCTACTTTCGTCTAACTTCCCAGACCG
CTTCTTATAGTTCAGTAGTGAGAAGGCCTAGATCACACACGGATTGATTCAAGGTTCAAG
CTGACCAATAGAATAACATAAAAGGGACTGTGCGAATATGGGTGAAAGAAATCCGATTCA
ATGTTCCATATGTTTGGAGGAGCTTAAAGATCCAAGAATCCTGCCTTGCTGGCACAGTGC
TTGTTTTACATGCATTCTCGGCATGACTCAACTTGGCCGAGGAAGGACGGTTGCATGTCA
CATTTGCCGTAGTACGTTGCTATTTGAGAATATCCGATCCTTGCCCAATCCAATTTCGTG
TCGACAATGCGACAGCTTCACCATAAGCCCAAGGAAATTTCCTTGTTGCAATTGCTTATG
CTGTTCTACATGCATTAAAAACACTCTGGAGGACGGGTTGACAACTTGTCCTAACCAATG
CACGCCTGATGACAAATATGCCATGGACGATCTTCCTCTGGCACGTCTTTGTTCCATGTG
CTTCACTCTGCACACAGAAGAACAGCGACAGTGTCAGCATTTTTTATGCAAACGCTGCTC
ATCAGCGTTAGGAAATCGAAGCGTTTGTCGCGATGAAATTTGTGATCCAAGAATTCTACC
ATGTTGGCACGCAGCCTGCTTGACATGCATCCTACGGCTGACACAAAACAGCAGTGGAAG
CGCAGTGGCTTGTCCTGTTTGTCGACAAACATTGATGTTCGTAAATATCCGTTCGTTACC
AAATCCAATCAACTGTGCAACATGCGAGAAGTTCGTAATGAATCCTCGAAANTATCCTTG
TTGCAACCGACTGAGCTGTAAAGAATGCATTCAGGCAACAGAGATTGATGGGGAAGCGGT
GTGTGTGAACGATTGTAGCCCGGGTGCGAGACATAAGATAGATGACCTCCCTGCCGGAAA
ACTATGCCCCGTGTGCTTTGCATTTCACACAGAGCAAGCACACCGATGTGGACATTTTCT
TTGTCAACGCTGTAAGTCTGAGCAACAATCAGCAAGATGTAATATCTGCATTGCTGCAGC
AAGTTCACCACCAAGACCGGTAAATCCATTTGCTGCTGCTGCAGCAGCACCAGCCGATCC
TAATGTGCATCATAATATCTGGCAGCAAAGCCAAACGAGAGAAGTCGAAATCAGGGCGGA
ATACGGAAAAGCGTGGCAGTATATCATGGAGGAAATTGATAGAAAATTATGTTTTATTTG
CGATGATGAGCTCACGGATCCACGAATTTTACCTTGCTGGCACGCAAGTTGCTTTACATG
CATCCTTGAAATGACACAGAGCGATTTTGAGGGAAGGGCGATCCGNTGTCGTGAATGCCA
GGCTACCTTGCCATTTGATAACATTCGTTCTTTGCCGGAACCAATTCATTGTGCAGTGTG
TGGACACCATACAAAGGATCCGGTGATGTTTCCCTGCTGCACAAGAATATTTTGCTTGAA
GTGCGTCTGGAAGACAAGGCTGGAAGGATGCAAAGTATGCGAGGCTGTGGCCGGTCAGGC
GCCGGAGCCAATCGACCCTTTCTCAGAGAATGCAGGGAATATCTTCAGCAGCAATACCCC
CTCCACACAAATCCCAAATAACCAAGTCGATCTGGCTCGTCTGCAGCAGTTGATCAGACT
GCACCAGCTACAGCAACAGCAACGGCTTACCAAGCGTCAGTTCTCATCTACGGATTTTGT
TTTACAACATGGGCGTTGGTATCACTTTCAATGTTAA

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[3-57] 2.4E-10 - T[149-212] 1.3E-8 - T[356-424] 4.0E-8
ProSiteProfiles
Znf_RING (IPR001841) - T[9-51] 11.058 - T[156-196] 10.38 - T[270-304] 9.126 - T[365-408] 10.055
Pfam
Znf_C3HC4_RING-type (IPR018957) - T[9-50] 1.9E-7 - T[156-195] 3.1E-6 - T[365-407] 1.5E-5
SMART
Znf_RING (IPR001841) - T[9-50] 4.3E-7 - T[144-195] 0.0023 - T[213-249] 5.8 - T[270-304] 0.78 - T[365-407] 6.0E-4 - T[425-461] 0.44

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value