- Transcript 'KH2012:KH.C1.738.v1....' >
- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Cisavi.CG.ENS81.R15....' >
- Transcript 'Boleac.CG.SB_v3.S188...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S188.g04172.01.t
Possible name(s)
TRIM2; TRIM21; TRIM56
Gene model
Location
S188 [156,685 / 171,893]
Amino acid sequence
Length: 539
>Boleac.CG.SB_v3.S188.g04172.01.p
MGERNPIQCSICLEELKDPRILPCWHSACFTCILGMTQLGRGRTVACHICRSTLLFENIR
SLPNPISCRQCDSFTISPRKFPCCNCLCCSTCIKNTLEDGLTTCPNQCTPDDKYAMDDLP
LARLCSMCFTLHTEEQRQCQHFLCKRCSSALGNRSVCRDEICDPRILPCWHAACLTCILR
LTQNSSGSAVACPVCRQTLMFVNIRSLPNPINCATCEKFVMNPRXYPCCNRLSCKECIQA
TEIDGEAVCVNDCSPGARHKIDDLPAGKLCPVCFAFHTEQAHRCGHFLCQRCKSEQQSAR
CNICIAAASSPPRPVNPFAAAAAAPADPNVHHNIWQQSQTREVEIRAEYGKAWQYIMEEI
DRKLCFICDDELTDPRILPCWHASCFTCILEMTQSDFEGRAIRCRECQATLPFDNIRSLP
EPIHCAVCGHHTKDPVMFPCCTRIFCLKCVWKTRLEGCKVCEAVAGQAPEPIDPFSENAG
NIFSSNTPSTQIPNNQVDLARLQQLIRLHQLQQQQRLTKRQFSSTDFVLQHGRWYHFQC
Nucleotide sequence
Length: 1,777
>Boleac.CG.SB_v3.S188.g04172.01.t
ATGAGGAAGTGTATGCCCTCACAGTATCAGTATGCTACTTTCGTCTAACTTCCCAGACCG
CTTCTTATAGTTCAGTAGTGAGAAGGCCTAGATCACACACGGATTGATTCAAGGTTCAAG
CTGACCAATAGAATAACATAAAAGGGACTGTGCGAATATGGGTGAAAGAAATCCGATTCA
ATGTTCCATATGTTTGGAGGAGCTTAAAGATCCAAGAATCCTGCCTTGCTGGCACAGTGC
TTGTTTTACATGCATTCTCGGCATGACTCAACTTGGCCGAGGAAGGACGGTTGCATGTCA
CATTTGCCGTAGTACGTTGCTATTTGAGAATATCCGATCCTTGCCCAATCCAATTTCGTG
TCGACAATGCGACAGCTTCACCATAAGCCCAAGGAAATTTCCTTGTTGCAATTGCTTATG
CTGTTCTACATGCATTAAAAACACTCTGGAGGACGGGTTGACAACTTGTCCTAACCAATG
CACGCCTGATGACAAATATGCCATGGACGATCTTCCTCTGGCACGTCTTTGTTCCATGTG
CTTCACTCTGCACACAGAAGAACAGCGACAGTGTCAGCATTTTTTATGCAAACGCTGCTC
ATCAGCGTTAGGAAATCGAAGCGTTTGTCGCGATGAAATTTGTGATCCAAGAATTCTACC
ATGTTGGCACGCAGCCTGCTTGACATGCATCCTACGGCTGACACAAAACAGCAGTGGAAG
CGCAGTGGCTTGTCCTGTTTGTCGACAAACATTGATGTTCGTAAATATCCGTTCGTTACC
AAATCCAATCAACTGTGCAACATGCGAGAAGTTCGTAATGAATCCTCGAAANTATCCTTG
TTGCAACCGACTGAGCTGTAAAGAATGCATTCAGGCAACAGAGATTGATGGGGAAGCGGT
GTGTGTGAACGATTGTAGCCCGGGTGCGAGACATAAGATAGATGACCTCCCTGCCGGAAA
ACTATGCCCCGTGTGCTTTGCATTTCACACAGAGCAAGCACACCGATGTGGACATTTTCT
TTGTCAACGCTGTAAGTCTGAGCAACAATCAGCAAGATGTAATATCTGCATTGCTGCAGC
AAGTTCACCACCAAGACCGGTAAATCCATTTGCTGCTGCTGCAGCAGCACCAGCCGATCC
TAATGTGCATCATAATATCTGGCAGCAAAGCCAAACGAGAGAAGTCGAAATCAGGGCGGA
ATACGGAAAAGCGTGGCAGTATATCATGGAGGAAATTGATAGAAAATTATGTTTTATTTG
CGATGATGAGCTCACGGATCCACGAATTTTACCTTGCTGGCACGCAAGTTGCTTTACATG
CATCCTTGAAATGACACAGAGCGATTTTGAGGGAAGGGCGATCCGNTGTCGTGAATGCCA
GGCTACCTTGCCATTTGATAACATTCGTTCTTTGCCGGAACCAATTCATTGTGCAGTGTG
TGGACACCATACAAAGGATCCGGTGATGTTTCCCTGCTGCACAAGAATATTTTGCTTGAA
GTGCGTCTGGAAGACAAGGCTGGAAGGATGCAAAGTATGCGAGGCTGTGGCCGGTCAGGC
GCCGGAGCCAATCGACCCTTTCTCAGAGAATGCAGGGAATATCTTCAGCAGCAATACCCC
CTCCACACAAATCCCAAATAACCAAGTCGATCTGGCTCGTCTGCAGCAGTTGATCAGACT
GCACCAGCTACAGCAACAGCAACGGCTTACCAAGCGTCAGTTCTCATCTACGGATTTTGT
TTTACAACATGGGCGTTGGTATCACTTTCAATGTTAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[3-57] 2.4E-10 - T[149-212] 1.3E-8 - T[356-424] 4.0E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[9-51] 11.058 - T[156-196] 10.38 - T[270-304] 9.126 - T[365-408] 10.055 |
| Pfam |
Znf_C3HC4_RING-type (IPR018957) - T[9-50] 1.9E-7 - T[156-195] 3.1E-6 - T[365-407] 1.5E-5 |
| SMART |
Znf_RING (IPR001841) - T[9-50] 4.3E-7 - T[144-195] 0.0023 - T[213-249] 5.8 - T[270-304] 0.78 - T[365-407] 6.0E-4 - T[425-461] 0.44 |
| Protein Name | Identity | Bit Score | e-value |
|---|