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- Transcript 'Boleac.CG.SB_v3.S179...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S179.g03914.01.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
S179 [160,900 / 162,959]
Amino acid sequence
Length: 291
>Boleac.CG.SB_v3.S179.g03914.01.p
MGRKRTLKEPQVGHVWPNPLGEHPSVNALVFSPAVTVQTDPDGDGGLKRPRTTISPKQLD
TLREAYKKSSKPARHVREQLSNETGLDMRVVQVWFQNRRAKDKRTKNDNSRQLRGCYAQG
QIHDVDRIIENAKQPRNCAQFLHPGDHGENSQLRSSMLQYSHQSLDAEFRPPNFRAQFDE
GDDDLNGQNEDCMVFLDNEQAIEQREDYLMTTSRTATNNFPQQYHPAPFHRQLNTMQILP
DMVHMMTQMQVVNPAANEVDIGSNSSGLSTISDFSASPNSWITDIEHVSQY
Nucleotide sequence
Length: 876
>Boleac.CG.SB_v3.S179.g03914.01.t
ATGGGCCGCAAGAGAACTCTAAAAGAGCCGCAGGTTGGCCATGTCTGGCCTAATCCCTTA
GGAGAGCACCCTTCCGTAAACGCGCTGGTATTTTCACCTGCTGTTACAGTGCAGACAGAC
CCTGATGGAGATGGCGGACTGAAAAGACCGAGAACAACGATATCTCCAAAGCAATTGGAT
ACTTTGCGAGAGGCGTACAAGAAAAGTTCCAAACCAGCTCGCCATGTTCGAGAACAATTG
AGCAACGAAACTGGACTGGACATGCGCGTCGTCCAGGTGTGGTTTCAAAACAGACGCGCC
AAAGACAAACGAACAAAGAATGACAACTCCCGGCAGTTGAGAGGATGTTACGCACAAGGA
CAAATTCATGACGTTGATCGTATCATTGAAAATGCGAAACAGCCGAGAAACTGCGCACAA
TTCTTACATCCCGGAGACCACGGAGAAAATTCACAACTGCGATCCTCAATGCTTCAGTAT
AGCCACCAATCACTAGATGCAGAATTTCGCCCACCAAATTTCAGAGCGCAATTTGACGAA
GGGGACGATGACTTGAACGGACAAAATGAGGACTGCATGGTATTCCTCGATAATGAACAA
GCCATCGAGCAACGCGAAGACTACCTCATGACAACATCACGCACGGCAACTAACAATTTT
CCGCAGCAATACCACCCTGCTCCGTTCCACCGGCAGTTGAACACAATGCAAATATTGCCG
GATATGGTTCATATGATGACACAAATGCAAGTGGTAAACCCGGCAGCGAACGAAGTGGAC
ATCGGATCCAATTCTAGCGGGCTATCTACTATTAGCGATTTTTCTGCTAGTCCAAATTCA
TGGATTACGGATATTGAACACGTGTCACAATATTAG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[42-109] 5.13E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[45-105] 17.653 |
| SMART |
Homeobox_dom (IPR001356) - T[47-109] 8.9E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[48-106] 5.79707E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[48-104] 2.7E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[80-103] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 68.75 % | 114 | 2.7E-29 |
| LHX3_HUMAN | 35.178 % | 114 | 4.79E-29 |
| LHX5_HUMAN | 61.538 % | 88.6 | 6.39E-20 |