- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Boleac.CG.SB_v3.S176...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S176.g03838.01.t
Possible name(s)
PAFAH1B1; POC1B; RACK1
Gene model
Location
S176 [140,451 / 141,781]
Amino acid sequence
Length: 253
>Boleac.CG.SB_v3.S176.g03838.01.p
MEQMTLRGTLKGHNGWVTQIATTPAYPDMVLSSSRDRSIILWKLTREEGKYGVPQRRMKG
HSHFVSDIVISSDGQFALSGSWDGELRLWDLTLGVSTRRFVGHTKDVLSVAFSSDNRQIV
SASRDKTIKLWNTLGVCKYTIADEGHSEWVSCVRFSPNSSNPVIVSCGWDKVVKIWDLEG
KVIVDELKPELINMPNSKADPPECLSLAWYDRALNKVSSDFLVXSQHEMPASEMEXCKAI
HGDIRHNLGMVGH
Nucleotide sequence
Length: 762
>Boleac.CG.SB_v3.S176.g03838.01.t
ATGGAGCAAATGACATTACGTGGAACGCTGAAAGGTCACAACGGATGGGTGACTCAGATT
GCAACAACTCCAGCCTATCCCGATATGGTTTTGTCATCATCACGTGATAGAAGTATCATC
TTGTGGAAGTTGACCAGAGAGGAGGGAAAATACGGTGTCCCACAGCGTAGAATGAAGGGC
CACTCCCACTTTGTTTCCGATATAGTGATTTCATCAGATGGTCAATTTGCACTATCAGGT
TCCTGGGATGGTGAATTGAGGTTGTGGGATCTCACCCTTGGTGTCAGCACGAGAAGATTT
GTAGGGCACACCAAGGACGTTCTTTCCGTTGCCTTCTCATCTGACAACAGGCAGATTGTT
TCAGCGTCACGAGATAAAACCATCAAGTTGTGGAACACGCTAGGAGTTTGCAAGTACACC
ATTGCAGATGAAGGTCACAGCGAATGGGTTTCTTGTGTAAGATTCTCTCCAAACTCTAGC
AACCCGGTCATCGTTTCATGTGGATGGGATAAAGTGGTCAAGATTTGGGATTTAGAAGGA
AAAGTTATTGTTGATGAATTGAAGCCAGAGCTCATCAACATGCCGAACAGCAAAGCTGAT
CCACCAGAATGTCTCTCTTTGGCATGGTATGATAGGGCATTAAACAAAGTATCCAGTGAC
TTTTTGGTTNGGTCTCAGCATGAAATGCCTGCATCAGAAATGGAAAGNTGTAAGGCAATT
CATGGGGACATCAGGCACAATCTAGGCATGGTCGGACATTGA
| SMART |
WD40_repeat (IPR001680) - T[3-43] 5.9E-6 - T[51-90] 1.4E-6 - T[93-132] 8.9E-10 - T[134-177] 4.8E-9 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-188] 4.81E-48 |
| Pfam |
WD40_repeat (IPR001680) - T[7-43] 7.9E-4 - T[53-90] 2.1E-7 - T[97-132] 4.2E-8 - T[144-177] 8.0E-7 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[7-188] 3.2E-77 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[10-186] 37.202 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[10-44] 10.976 - T[58-99] 14.051 - T[100-132] 15.321 - T[143-179] 12.48 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[77-91] . - T[119-133] . - T[164-178] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[77-91] 3.4E-8 - T[119-133] 3.4E-8 - T[164-178] 3.4E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 31.72 % | 91.7 | 3.11E-21 |
| LIS1_HUMAN | 38.333 % | 100 | 1.07E-24 |
| RACK1_HUMAN | 84.746 % | 328 | 1.31E-113 |