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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S2...'
  2. Clone 'cilv010p01'
  3. Clone 'CCTU9206'
  4. Transcript 'Harore.CG.MTP2014.S4...'
  5. Transcript 'Boleac.CG.SB_v3.S176...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S176.g03838.01.t

Possible name(s)

PAFAH1B1; POC1B; RACK1

Location

S176 [140,451 / 141,781]

Sequences

Amino acid sequence

Length: 253

>Boleac.CG.SB_v3.S176.g03838.01.p
MEQMTLRGTLKGHNGWVTQIATTPAYPDMVLSSSRDRSIILWKLTREEGKYGVPQRRMKG
HSHFVSDIVISSDGQFALSGSWDGELRLWDLTLGVSTRRFVGHTKDVLSVAFSSDNRQIV
SASRDKTIKLWNTLGVCKYTIADEGHSEWVSCVRFSPNSSNPVIVSCGWDKVVKIWDLEG
KVIVDELKPELINMPNSKADPPECLSLAWYDRALNKVSSDFLVXSQHEMPASEMEXCKAI
HGDIRHNLGMVGH

Nucleotide sequence

Length: 762

>Boleac.CG.SB_v3.S176.g03838.01.t
ATGGAGCAAATGACATTACGTGGAACGCTGAAAGGTCACAACGGATGGGTGACTCAGATT
GCAACAACTCCAGCCTATCCCGATATGGTTTTGTCATCATCACGTGATAGAAGTATCATC
TTGTGGAAGTTGACCAGAGAGGAGGGAAAATACGGTGTCCCACAGCGTAGAATGAAGGGC
CACTCCCACTTTGTTTCCGATATAGTGATTTCATCAGATGGTCAATTTGCACTATCAGGT
TCCTGGGATGGTGAATTGAGGTTGTGGGATCTCACCCTTGGTGTCAGCACGAGAAGATTT
GTAGGGCACACCAAGGACGTTCTTTCCGTTGCCTTCTCATCTGACAACAGGCAGATTGTT
TCAGCGTCACGAGATAAAACCATCAAGTTGTGGAACACGCTAGGAGTTTGCAAGTACACC
ATTGCAGATGAAGGTCACAGCGAATGGGTTTCTTGTGTAAGATTCTCTCCAAACTCTAGC
AACCCGGTCATCGTTTCATGTGGATGGGATAAAGTGGTCAAGATTTGGGATTTAGAAGGA
AAAGTTATTGTTGATGAATTGAAGCCAGAGCTCATCAACATGCCGAACAGCAAAGCTGAT
CCACCAGAATGTCTCTCTTTGGCATGGTATGATAGGGCATTAAACAAAGTATCCAGTGAC
TTTTTGGTTNGGTCTCAGCATGAAATGCCTGCATCAGAAATGGAAAGNTGTAAGGCAATT
CATGGGGACATCAGGCACAATCTAGGCATGGTCGGACATTGA

InterProScan

SMART
WD40_repeat (IPR001680) - T[3-43] 5.9E-6 - T[51-90] 1.4E-6 - T[93-132] 8.9E-10 - T[134-177] 4.8E-9
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[3-188] 4.81E-48
Pfam
WD40_repeat (IPR001680) - T[7-43] 7.9E-4 - T[53-90] 2.1E-7 - T[97-132] 4.2E-8 - T[144-177] 8.0E-7
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[7-188] 3.2E-77
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[10-186] 37.202
ProSiteProfiles
WD40_repeat (IPR001680) - T[10-44] 10.976 - T[58-99] 14.051 - T[100-132] 15.321 - T[143-179] 12.48
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[77-91] . - T[119-133] . - T[164-178] .
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[77-91] 3.4E-8 - T[119-133] 3.4E-8 - T[164-178] 3.4E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
POC1B_HUMAN 31.72 % 91.7 3.11E-21
LIS1_HUMAN 38.333 % 100 1.07E-24
RACK1_HUMAN 84.746 % 328 1.31E-113