- EST 'AHC0AAA222YB24_RM1' >
- Transcript 'KH2012:KH.C2.216.v2....' >
- Transcript 'KH2012:KH.C2.216.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S16....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S16.g03320.01.t
Possible name(s)
TRIM2; TRIM3; TRIM56
Gene model
Location
S16 [7,051 / 22,940]
Amino acid sequence
Length: 907
>Boleac.CG.SB_v3.S16.g03320.01.p
MTSLHEILCVSKQNSIINYCLLFLSIASNFDDREITKLIITRCDMASGGVAIQKTSTEDS
VEEQERIAVRKMASSQDLLTRINEEFLTCQICFETYTYPKSLNCQHTFCKKCLQEYFTPN
TTALQCPTCRCVQPLPSGGIQDLKDNFFISSMSDMLKTVKEISSDDKGNTSLLCDTCDED
CRKPAMSRCLXCTDFLCSDCSIWHRRTKLTRGHKIVSLQEFETGIHNEELKSRAKIYCTV
HEGEAAKMYCKTCECPICHECIECGHMAHSRCLLKEEVSNQSLQIEKLLVYAQSKMDVMQ
DMMKSLNEITELKRKSCEETEAMITRTSNKLINMINRRKEELIDKVRSMQKSEAKQIDAD
VDAVEMQINSLLSCSEFSKKVLEYGTPKEILGLKXQMTQMLKQLLETHPANKFHKENRTE
PTQFTFDEGEVKNVEDIFGKIGIVTKPFPDGIEKVLRSLDTFCLKCSPPPKPITEDMPLK
ESIEINLIQQLGKQGDGDGEFESTPNLAVNSVGEVITSDTDGCKIQIFDPLGRFKDAFKT
EVKGKYLHPMGVAVLRNDDIVVCCEDQVYVWTYEGKLLQGIGKGYFTNCNSVVVDSKNRL
IVTDMAQRIVVVFESDGKFVCKFDGSXNGAAGKLVEPRYVTCDSKDNIIVTDAGNCSVKK
FNKKGELLRMFGEEGSMEGQFQGPRGVCTDEHDNIIVADCWSHRVDLFTPEGSFIRHLIS
GVEGLHFPWSVAMTSSGRMMLSEDYSWAVKIFSLPGFAEIYSASITTQLLFLAEYRGDSP
PPDSEGEITSPVSLIRGLELMHGQFDMANINKLSRWLKSSTNDAANDHIWRSLRIPHTSS
YGDREKPIKAASRSKSFTSDSAYSREHFSLPRPSRLSHKSTTESTSGFPLSPNSLMMDGT
NEIXLDE
Nucleotide sequence
Length: 2,724
>Boleac.CG.SB_v3.S16.g03320.01.t
ATGACAAGTTTGCATGAAATTCTTTGCGTTTCTAAGCAGAATTCTATCATAAATTATTGT
CTGTTGTTTTTATCTATAGCCAGTAATTTTGACGACCGCGAAATCACTAAACTGATAATT
ACAAGATGTGACATGGCTTCTGGAGGTGTTGCAATTCAGAAAACATCAACTGAAGATTCT
GTAGAAGAACAGGAACGGATCGCGGTGCGAAAAATGGCTAGTTCTCAGGATCTATTAACA
AGGATAAATGAAGAGTTTTTGACTTGTCAAATATGTTTTGAAACTTACACTTATCCAAAG
AGTTTAAACTGCCAACATACGTTTTGCAAGAAATGCTTGCAGGAGTACTTCACTCCCAAC
ACGACGGCGTTGCAGTGTCCTACATGCAGATGCGTTCAACCATTACCAAGCGGCGGGATT
CAAGATTTGAAGGACAATTTCTTCATTTCGAGCATGTCTGACATGCTGAAGACGGTGAAA
GAAATCAGCAGTGATGACAAGGGCAACACGTCATTATTGTGTGATACGTGTGATGAAGAC
TGCAGAAAACCAGCAATGTCGCGATGTCTAGANTGTACCGACTTTTTATGCAGCGACTGT
TCCATATGGCACAGACGAACGAAGTTAACGAGAGGTCATAAAATCGTCTCTCTGCAAGAG
TTTGAGACGGGGATTCACAATGAAGAATTGAAAAGCAGGGCAAAGATTTATTGCACGGTA
CATGAAGGTGAAGCAGCGAAAATGTATTGCAAAACGTGCGAGTGTCCAATATGTCACGAA
TGCATCGAATGTGGTCATATGGCTCACAGTCGCTGTTTATTGAAAGAAGAAGTGTCCAAT
CAGAGTCTTCAGATCGAAAAGCTACTGGTTTACGCACAAAGCAAGATGGACGTGATGCAA
GACATGATGAAAAGTTTGAATGAAATCACTGAACTCAAACGAAAGTCTTGCGAAGAAACA
GAAGCAATGATTACAAGAACATCAAACAAATTGATCAATATGATTAACAGAAGGAAAGAA
GAACTTATCGATAAAGTTCGATCAATGCAGAAAAGTGAAGCAAAACAGATCGACGCTGAT
GTNGATGCAGTCGAAATGCAAATTAATTCTCTCCTATCCTGCTCGGAATTCTCAAAGAAG
GTTTTAGAGTATGGTACGCCGAAAGAAATACTTGGGTTGAAAAANCAAATGACACAAATG
CTGAAACAGCTTCTCGAGACCCACCCCGCCAACAAATTTCATAAAGAAAACCGAACTGAG
CCAACTCAGTTTACATTTGATGAAGGAGAAGTCAAAAATGTTGAGGACATTTTTGGAAAG
ATTGGAATTGTGACCAAACCTTTCCCTGATGGCATTGAAAAAGTGCTTCGCAGTCTTGAC
ACCTTTTGCCTGAAGTGTTCTCCTCCGCCTAAGCCGATCACTGAGGACATGCCTTTGAAA
GAATCTATCGAGATTAACTTGATTCAACAGCTGGGTAAACAAGGTGACGGTGATGGAGAA
TTTGAATCGACTCCCAACCTTGCAGTAAATTCAGTAGGGGAAGTAATTACATCCGACACG
GACGGGTGCAAAATTCAGATATTCGATCCTCTCGGCCGCTTCAAAGACGCTTTCAAGACA
GAGGTGAAAGGGAAATATTTACATCCGATGGGTGTCGCTGTTTTGCGTAATGATGACATC
GTCGTGTGTTGCGAGGATCAAGTCTACGTTTGGACCTATGAAGGGAAACTTCTTCAAGGA
ATCGGAAAAGGATACTTTACGAACTGCAACAGCGTAGTTGTTGATTCCAAAAATAGGCTC
ATCGTTACNGATATGGCACAGCGAATCGTTGTCGTATTCGAGTCGGACGGGAAATTTGTT
TGTAAATTTGACGGGAGTGANAACGGTGCAGCGGGGAAATTGGTCGAACCTCGTTACGTT
ACTTGCGACTCAAAAGATAACATCATTGTAACGGATGCTGGGAATTGCAGTGTCAAGAAA
TTTAATAAGAAAGGAGAATTATTACGAATGTTCGGAGAGGAGGGTTCAATGGAAGGTCAA
TTTCAAGGACCTCGTGGCGTCTGTACTGATGAACACGACAATATCATCGTTGCAGATTGC
TGGAGTCACCGAGTTGACTTGTTTACACCAGAAGGAAGTTTCATTCGACACCTTATTTCA
GGAGTTGAAGGACTACACTTTCCATGGTCAGTTGCGATGACATCATCTGGACGAATGATG
CTCTCTGAGGATTATAGCTGGGCAGTCAAGATATTTTCATTACCAGGTTTTGCTGAAATC
TACTCTGCTTCGATAACGACCCAGCTGCTCTTTCTTGCAGAATATCGAGGCGATTCACCT
CCACCTGATTCTGAGGGTGAGATCACGTCACCTGTCTCTTTGATACGAGGGCTCGAGTTA
ATGCATGGCCAATTCGACATGGCAAATATCAATAAACTCTCAAGATGGTTAAAGTCGTCA
ACAAACGATGCAGCGAACGATCATATATGGCGAAGTTTGCGAATTCCTCACACTTCTTCC
TATGGAGATCGTGAGAAACCGATCAAAGCTGCATCAAGAAGCAAATCATTCACGAGTGAC
TCTGCNTACTCCCGCGAACATTTCTCATTACCACGACCGTCTCGACTATCACACAAAAGC
ACAACCGAATCTACTTCCGGGTTTCCACTGTCTCCCAATTCTTTGATGATGGATGGCACT
AACGAAATANCACTAGATGAATAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[69-151] 3.0E-15 |
| SMART |
Znf_RING (IPR001841) - T[89-129] 1.1E-7 - T[255-320] 3.8 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[89-127] 1.6E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[89-130] 13.227 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[104-113] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[169-218] 8.944 - T[233-274] 10.58 |
| SMART |
Znf_B-box (IPR000315) - T[169-218] 0.031 - T[233-274] 0.048 |
| CDD |
Znf_B-box (IPR000315) - T[236-274] 2.09935E-6 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[479-672] 1.8E-42 - T[673-761] 2.5E-18 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[488-531] 8.491 - T[575-616] 8.162 - T[625-664] 10.876 - T[671-711] 13.713 - T[712-755] 5.49 |
| Pfam |
NHL_repeat (IPR001258) - T[681-705] 1.1E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRIM2_HUMAN | 30.671 % | 162 | 2.73E-41 |
| TRIM3_HUMAN | 34.182 % | 158 | 4.33E-40 |
| TRI56_HUMAN | 27.679 % | 150 | 2.1E-37 |