- Transcript 'Boleac.CG.SB_v3.S169...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S169.g03631.01.t
Possible name(s)
HOXA4; HOXC4; HOXD4
Gene model
Location
S169 [204,733 / 211,275]
Amino acid sequence
Length: 576
>Boleac.CG.SB_v3.S169.g03631.01.p
MMTALHEEVVVTSLPQPFGVEMNVATAVTADTCASVAETLTPLRSQSQQSGTGNYLQGMQ
DMMRSQEDDLSNHGLNGLSATALPESAGEFFPTESREFGSVNDRMVKSEFHSTSNAGSNL
YREIGQENMASIASGDDKLKKCMKGKGDSPPTVYPWMKRIHSSHVFSNGAEQGKRPRTAY
TRXQVLELEKEFHFNRYLTRRRRIEIAHSLCLTERQVKIWFQNRRMKWKKDNKLPNTKSR
VLHGGNMGSFDQAISPPLSSPTNDGISMHCRSPMNIMPNNNHSPEHRPMNGYESRGQTAR
QMSEXYXGSYDLSASSQHQPQRRGFMNSAVERMLNGSPGFFYXRQSEYSVTKPDGGATVA
IQGKFDPLGRFDESNFDVTPKSNELYQSSNGNRWLARSTLFTGLPSPATSSSASVHGSSN
AYQHSSVSPXDVSVKESPLXILQFASTPSSVHHHRPGFISSLSCPAGGSGMISDKGPXSH
LFKRPPSFPSLXSKPVAPFRPATSHFGINYPGYSNGLRRNNALGNTGCLQSNNCDSSXTS
XPRSNEXGINSTGLRYQANIWLTNKTFDPSXDSFFS
Nucleotide sequence
Length: 1,731
>Boleac.CG.SB_v3.S169.g03631.01.t
ATGATGACAGCGTTGCATGAAGAGGTGGTAGTCACCAGTTTACCACAACCGTTTGGTGTT
GAAATGAATGTAGCGACAGCAGTGACTGCTGATACTTGCGCCAGTGTTGCGGAAACATTG
ACACCGTTACGTTCACAATCTCAACAATCGGGTACTGGCAATTATTTGCAAGGCATGCAA
GACATGATGCGATCACAAGAAGACGATCTATCTAACCACGGCCTCAACGGCTTGAGCGCA
ACGGCGTTGCCGGAATCGGCCGGAGAGTTTTTCCCGACTGAAAGCAGAGAATTCGGCAGT
GTAAATGATCGAATGGTGAAAAGTGAATTTCACAGTACGTCTAACGCTGGATCGAATCTG
TATCGCGAAATCGGTCAGGAAAACATGGCGTCGATTGCAAGCGGCGATGACAAATTGAAG
AAATGCATGAAAGGAAAAGGCGATTCACCACCCACCGTGTATCCATGGATGAAGCGAATT
CACTCTAGCCATGTATTCAGTAATGGCGCAGAACAAGGGAAGAGGCCGAGAACAGCCTAC
ACTCGCCANCAGGTTTTGGAACTTGAAAAGGAGTTTCATTTCAATCGATACCTCACTCGA
CGTCGCAGAATCGAAATCGCGCATTCCCTGTGCCTAACAGAACGACAAGTGAAGATTTGG
TTTCAAAACCGCAGAATGAAATGGAAAAAAGACAATAAATTACCGAATACAAAATCAAGA
GTGCTTCATGGTGGTAATATGGGCTCGTTCGATCAAGCGATATCACCACCGTTGTCATCT
CCAACCAACGATGGAATATCTATGCATTGTCGATCTCCCATGAACATAATGCCTAACAAC
AATCATTCGCCGGAACATAGACCAATGAATGGTTATGAATCACGCGGACAAACAGCGCGA
CAAATGTCAGAAGANTACTTNGGATCGTATGATTTGTCAGCGTCAAGTCAACATCAACCA
CAGAGACGTGGTTTCATGAATTCGGCAGTGGAAAGAATGCTNAATGGCTCGCCTGGATTT
TTCTACCNACGACAATCTGAATATTCTGTTACTAAACCAGACGGTGGCGCTACTGTTGCA
ATTCAAGGGAAATTTGATCCTCTGGGTAGATTCGACGAATCCAACTTCGATGTTACACCG
AAGTCTAATGAGCTTTACCAATCCTCCAACGGCAACCGTTGGCTGGCCAGATCAACTCTC
TTCACCGGCCTTCCCTCTCCGGCAACCTCCTCTTCCGCCAGCGTACATGGGTCAAGCAAT
GCCTATCAACACTCTTCCGTATCACCTANCGACGTATCAGTGAAGGAAAGTCCGTTAAAN
ATTCTACAATTCGCATCAACACCTTCGTCCGTACATCACCATCGTCCAGGATTCATTTCC
TCACTGTCGTGTCCGGCTGGTGGAAGCGGAATGATATCTGATAAAGGTCCNGNAAGTCAT
TTATTTAAAAGACCTCCTAGTTTTCCATCGCTTGNCTCGAAACCNGTAGCACCCTTTCGA
CCAGCAACCAGTCATTTTGGCATTAATTACCCTGGGTACTCAAACGGTTTGAGAAGAAAC
AATGCATTAGGAAATACAGGTTGTCTACAATCTAATAATTGCGACTCGAGCNTGACATCG
NACCCNAGATCAAATGAANATGGAATTAACTCAACAGGCTTGAGATACCAAGCTAACATA
TGGCTTACTAACAAAACATTTGATCCGTCAANAGATAGCTTCTTCTCGTGA
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[152-159] 8.6E-5 - T[174-189] 8.6E-5 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[153-158] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[154-232] 1.67E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[171-231] 22.026 |
| SMART |
Homeobox_dom (IPR001356) - T[173-235] 3.8E-27 |
| CDD |
Homeobox_dom (IPR001356) - T[174-232] 9.87946E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[174-230] 5.6E-22 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[195-206] 2.6E-8 - T[210-220] 2.6E-8 - T[220-229] 2.6E-8 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[206-229] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA4_HUMAN | 75.472 % | 159 | 3.4E-44 |
| HXC4_HUMAN | 79.348 % | 154 | 5.53E-43 |
| HXD4_HUMAN | 77.419 % | 152 | 2.0E-42 |
