- Transcript 'Boleac.CG.SB_v3.S165...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S165.g03504.01.t
Possible name(s)
NR1I2; NR1I3; VDR
Gene model
Location
S165 [17,301 / 50,197]
Amino acid sequence
Length: 595
>Boleac.CG.SB_v3.S165.g03504.01.p
MLHVLKMASCDLSSANGAPEAHSQVPRRSISNSPSSSVSAESTSGDVKEKSPQEKICVVC
GDVATGTHFAAMTCEGCKGFXRRSMKKKVEFTCAFENQCAINKSNRKHCQACRLQKCIDM
GMNSSLIMSDESVEKKRALIKMNRERKAALKLKKQQEEMEQREQKQEAPSEQVIKLSEED
KALIKMMLASHEQSYDFSYEGYEKFRGNDQIAAPDPQELALQNSTLAWFAAETKNSSPTP
QSKGRKTKTESLDSSENTLSSCSDVPSKEHSPFGGFNLPDLCSAGLGEFGDMFSTLHGTQ
KPSFLDNILHNAVAMPNPMPRINSDGSASSSSSSPYMSSNSAQGFDGFPAMFPPPLEDSN
GNMLSNCQDLPGIGMYNMDLLESLQGFQGMFNNGQAQEHRQHSLFQHFCDIMTWGIKKVI
EFCKCIPEFXELETVDQINLLRGGCLEMLVLRSYFAFASEGDKYKSDKFEYSPQNFKEAG
ASSEFIEQYMKVHERMRKMNLKVEEICLLLGLVLFSTDRPGIQDCAKVEAMQKRIAQALR
AYEYTNHDPDKACVIYSELLLLLPVLRTINVLFSNTIFTLKNQNEMDPLILEVNN
Nucleotide sequence
Length: 4,588
>Boleac.CG.SB_v3.S165.g03504.01.t
ATTACAGGCTTCAATACGGTAACCCGTTACAGCATTNATATTCGAGTCATATAGGGGCAA
CTGCAGCGTGCAGCCTCGGTGTTGTTTGCTTGTTTTTTTGCCACATTTCATGCTGATCTG
CTGGTCGTCTTATTTGGATGCTACATGTATTGAAGATGGCTAGCTGTGACTTGAGTAGCG
CTAATGGTGCACCAGAAGCTCATAGCCAAGTACCAAGACGGAGTATATCAAACTCACCAA
GCAGCAGTGTGTCCGCAGAATCAACATCTGGCGATGTCAAAGAGAAATCACCGCAGGAGA
AGATTTGCGTCGTATGCGGAGATGTTGCTACTGGTACCCACTTTGCTGCGATGACATGCG
AAGGATGCAAAGGATTTTTNCGGCGTTCGATGAAGAAAAAGGTGGAATTCACATGTGCTT
TTGAAAATCAATGCGCCATCAACAAATCCAACAGAAAGCATTGTCAAGCTTGTCGACTAC
AGAAATGTATTGATATGGGGATGAACTCCAGTTTGATTATGAGCGATGAGAGCGTGGAGA
AGAAGAGAGCGCTCATCAAAATGAACAGGGAGAGAAAGGCTGCGTTGAAATTGAAAAAGC
AACAAGAAGAAATGGAACAGAGGGAACAAAAACAAGAGGCACCGTCGGAGCAAGTGATAA
AGTTGTCCGAGGAAGATAAAGCGTTGATAAAAATGATGCTAGCCAGCCACGAACAAAGTT
ATGATTTTTCTTACGAAGGCTATGAAAAGTTCCGAGGAAACGATCAAATCGCCGCTCCCG
ATCCCCAGGAGCTCGCTCTACAAAACAGCACTCTTGCATGGTTCGCAGCCGAGACTAAAA
ACTCGTCGCCAACGCCGCAAAGTAAAGGACGAAAGACCAAGACAGAAAGTCTAGATAGCT
CTGAAAACACATTGTCATCGTGCAGTGACGTTCCGTCGAAAGAGCATTCTCCGTTTGGAG
GCTTCAACCTGCCAGATTTGTGCTCTGCAGGACTTGGAGAATTCGGCGATATGTTCAGCA
CTTTGCACGGAACTCAAAAACCAAGTTTTCTCGATAATATTCTTCACAACGCGGTAGCAA
TGCCAAATCCAATGCCAAGAATCAACTCGGATGGATCAGCGAGCTCGTCGTCATCGTCGC
CGTATATGTCATCGAATTCTGCACAGGGTTTCGACGGCTTCCCGGCAATGTTCCCGCCAC
CGCTGGAAGATTCTAATGGGAACATGCTGTCAAACTGCCAAGATCTTCCAGGAATTGGGA
TGTACAATATGGATTTGTTAGAGTCTCTTCAAGGATTTCAAGGAATGTTCAACAATGGTC
AGGCGCAAGAACACAGACAACACTCGCTTTTTCAACACTTCTGTGACATTATGACGTGGG
GTATCAAAAAGGTGATCGAATTTTGTAAGTGTATCCCGGAATTTAANGAACTGGAGACAG
TGGATCAGATTAATTTACTTCGGGGAGGATGTCTGGAAATGCTCGTTTTACGGTCATACT
TTGCTTTCGCCAGCGAGGGAGATAAGTATAAGTCGGATAAATTCGAGTATTCGCCTCAGA
ATTTTAAAGAAGCCGGCGCAAGCAGCGAATTTATCGAACAGTACATGAAAGTGCACGAAC
GGATGAGGAAAATGAACCTTAAGGTCGAGGAAATCTGTCTTCTTTTGGGTCTCGTTCTCT
TCTCGACTGACCGCCCAGGAATTCAAGATTGTGCCAAAGTCGAAGCCATGCAAAAGAGAA
TCGCTCAAGCGTTAAGAGCATACGAGTACACCAACCACGATCCGGATAAGGCTTGTGTGA
TCTACTCTGAGCTGTTGCTCCTACTGCCNGTATTGAGAACCATCAACGTTCTCTTTTCAA
ATACTATCTTCACTCTGAAAAACCAGAACGAAATGGACCCCTTGATATTAGAAGTCAACA
ATTGAAAGAAAACTGTAAACTTGCCTAGAGACTGCGTCAAGCAGAAGGCAAAAGAGAAAA
CACTCTGAGCGAAATAGAACGTCGNATCTCCTCAAAGTCAACAGAAGATATTTCATTCTA
TGAACATTTGCATTAGGTGCATTCTTTTGTTGATTAGCTATTACTACTTCATATTGATAG
CGTTTTGTAAATCGTGCGGTTCAATTCTGGACAATACCNCGTTCAGATGCTAATGATTTC
TGTTTTTCTCCTTCATTTCAAACCCGACCGGCTGTCGAATCATAGCTGCTCAAGTGTTGA
TAGTTAAAAGCTGCCGGTTTCATGGTTTCGTGCGGTGCCTGTGTGATTTGATTGGCCAAA
ATCTCTTCAGACTATTTCAAGGTGTATATAATGAATTTTTGGGTCGTTGTTTTAATGTCG
GTTTTCTTTAACATTTTTGGTCTCTCGATTGACCAAGAGTACTTTGGTCGTTAGCAAAAC
TAGATCAATCTCGATTATTTACGTTAATCGGTATTTTTGATCAGGATTCAACTATTGGAT
CGATTCACATTTCAGATTCCAACTCTTGGACGCAGTTTTTGACTTCTTTAAATCATACGT
TCTTTATATGGAACGCTGGGTAGTTGGTTTTATGCAACTCGTGTGTTAAATAATCCTTGC
TTTGGGCAAAATGCACGGATGTGGATTGAATCAAACCCTGGGTTTTTGTTTCGAGTTAAC
ACGTGGAAGATATCTAAGAAACAGCTCTTTTGCTGCTTTCCGATTTGGGTCTAAAATTTT
GTGTTTAATCATGGATTATCGTAAACGCGGTTCATATCGTTTCATTGAAAATTTTGTCTG
CAATGATTAGTCTGCGGTAATTTATAATCGACATCCGTTCAACTCACCATCCTTATTGAA
TTTAGGGCTTTGATCAAATCCATTCGCCGTTGCAAGTCATGAAAATGCCGAGATGGCTCT
TGAGGGGCATTTTAACAACAGATTTACCAATGACTTTACACACAGGTTTTACCTATTGAG
AAATTCAGTCTAGTAACAACCGTCCTACTCAGTTCATCCTTGATATCTGTATGGTTNTAA
TTTCTTTGTTACGCAATGACTTGTCACTTGCCATGCAATTTCGGCCGAGCCTTCAGATTA
AGAATAAAGTTAATCGTGGATTAGTGATTGAGAATAAAGTGGGGAAATTGTGATCAATTT
TGTGTTACTCAAAATTTCAGAAATCAACGATTAACTTGAATCCTCGTCTGTTTACTCAAC
CATTTGTTTTGGCAAATTGTATCCACACTGCTAGCACCATTCCATTATTGTTGGAATATC
CAATCCATGAAAATTCATTGTTGTCATTATGACAGTATTTACTCACAGTTCCTTCCATGT
AGTTTCAAGCCTCCCGCCACGGCCCCCAGTTCTTTGCGGTTCTTAGAAATCCTATGAAAG
TTCTTGATAAACGTTCCATTGATGGCCTTTACCGTATCTATAAAGTTCAGCGGTTTTTGC
ACTTACAATCAAGTTTCATTGTCCCGTATCCGATAAAGTTCGTGNTGTCTGAGTTTTTGT
GGGGAGAAAAATCATTACTTTCTTTTCTTGCTCTTTGTAATGCAANCGTAGTGTTTCTGT
AATGGTGACTTTTGCTTATGTCTCTGTTTTCACTTTCANCTCAGTTCGGTTAACTTAACG
TGGCCTGTTTCTTTAGCACAACCAATTNAGTGACCATAGTGTATTCGAGGAAAGGCAGAA
ATTGCGATATTGCGATTTCTTTCCACTGTCCNAAATCTAATGCCCGCTTTTTCGTTTCAA
AAAATATGGTCGCGTTACTACCGAGGCACCTTGATGTTTNTTANTTAAATGCATTTTCGG
GGACTCGTGTGTGTGCAACTGCCCGTGCGCGGTGATGATATCGATTCAANAGAATAATAT
CATCTGCCCTACTGAAAAANTGCCTGTCCGATATTTTCCAATTATGCCCAAACGCAAATC
GATTGCTATGATATCTTTACTCTGGTACTCTGTTCATTTCGGACCTGCATTTTAGGTGAT
ATGATTTAGCACATGCGCTCTCTAGTTGATCTTGGTTGTTTCTTACTAGTGGGAAAGTAC
CCTGTTTTATATGGTTGGATGAATTTAGCATNTACATTTACCTACTAGACTAACATGGTC
AGGTTCGATGTGATGATTAGCAATAAATTACGAATCGATGACGTGCTCGATTTAAATATT
TATTATCACATTTCTGTCCTGATTTCAACCCGACGTTTTGAAAGTAAACGGTACATTCAT
TGACAGGCTGTAGTCACTTGTCACGCAACCTGTAGTGAAAATGGTTTCATGTTTTTGAAA
CGGTGTGTTTGAAAACGTTTTCCCTTTGTTTCGCCACCATCTTAAAAAGTGACATCATCA
TCACTTTGAATTCGTAATTTATCTCATTCTTTTTTTTGATAATGACTGTTCTGAAGTTCA
TCAAGTTTCCTTNTGAGTTCTTTTTATCGCAGCTGCGTTTCATGTTTTGTACATTTGTCG
GTGTGTTCTTCGCTTGTCTGTGTCATTATGTACAGTAAGCTAAAGCTGTTCGAGATAAGT
TATTTTGTTGACGTGTTTCGAGAAAACCAGAGTCGTCCTGTATCAGTCCTATCATCACGC
CTTGATCAGTGGTGGTTCTAGAACGGAC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[46-175] 1.9E-29 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[54-125] 4.0E-30 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[54-129] 18.345 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[56-123] 4.0E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[57-73] 1.3E-14 - T[73-88] 1.3E-14 - T[106-114] 1.3E-14 - T[114-122] 1.3E-14 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[118-128] 4.5E-15 - T[411-432] 4.5E-15 - T[432-448] 4.5E-15 - T[499-514] 4.5E-15 - T[558-575] 4.5E-15 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[389-593] 2.36E-51 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[401-579] 1.2E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[410-570] 2.0E-35 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 45.614 % | 150 | 7.19E-40 |
| NR1I3_HUMAN | 39.333 % | 123 | 7.54E-31 |
| NR1I2_HUMAN | 39.521 % | 125 | 3.27E-31 |