- Transcript 'Boleac.CG.SB_v3.S161...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S161.g03396.01.t
Possible name(s)
SOX11; SOX14; SOX4
Gene model
Location
S161 [30,097 / 31,925]
Amino acid sequence
Length: 553
>Boleac.CG.SB_v3.S161.g03396.01.p
MRFAKAGEKFVRRDDKYLGFILSQPKIYWFACKTAQEAALKTDRMNKKSLYTNSYRYLKS
ITRDAIGYFMISNYSSVTCNSDQMKTIIQQARINRIGNMRHDSLGSLSNSPFSPESQGYH
SDSELSTDGNHHYLTLRTDDLHASSPSPTRDCIDCVIDDEQQHSPPQIGHCAKPRNIANP
CPRKSKPKPCPESIIDELERMGPSQIVLPPPSVSSQKKEAARPGHIKRPLNAFMIWSKIE
RRKITEATPKLHNASVSKELGARWKLLSEQEXHIYVVEAERLRLQHMRDHPDYKYKPQKR
TKSTSKKDFDGDAPKSKSPKLQNDVTNHDNTVVVVTQPSDYVTSQQQNQQTALLKRKKSY
PANLPTVVTTIPEQHQQSTIESPTLKALLAPSMGATNDNFMTNSPVYVKFEQQQHCDVIP
QVQTNCQYPAQVKIEPQYEQYVISDNGARLACLQTAQPATNCYTQYNQQPQMTQQYQPQQ
VVTSSPPQQFLTPCQPQQTMMSYPQQTFVTSNPQQMMSPPDYSYTSDSTQHELEEFDAIL
ESLYGPTKVSQYF
Nucleotide sequence
Length: 1,662
>Boleac.CG.SB_v3.S161.g03396.01.t
ATGAGATTTGCCAAGGCGGGTGAAAAGTTCGTTCGACGAGACGACAAATATCTCGGTTTC
ATTTTATCGCAGCCCAAAATCTATTGGTTTGCCTGCAAAACTGCGCAGGAAGCAGCTTTG
AAAACTGACCGAATGAATAAGAAATCGTTATATACGAATAGCTATCGATATTTGAAATCT
ATTACTCGCGACGCTATTGGATACTTCATGATCAGCAATTACTCAAGCGTGACATGCAAC
AGTGACCAGATGAAAACCATCATCCAACAAGCACGAATCAACAGAATCGGCAACATGAGA
CACGACAGTCTCGGATCACTCTCAAACTCGCCGTTCTCTCCCGAATCGCAAGGTTACCAT
AGCGACTCGGAGCTATCCACAGATGGAAACCACCATTATCTCACATTGAGAACGGATGAC
CTTCACGCCAGCTCCCCGTCCCCTACACGTGACTGTATTGACTGCGTCATTGATGATGAG
CAACAACATTCCCCTCCCCAAATCGGGCACTGCGCCAAACCTCGCAACATCGCCAACCCG
TGCCCGCGCAAATCAAAACCCAAGCCGTGCCCAGAAAGCATCATCGACGAACTGGAACGA
ATGGGCCCTTCACAGATTGTTCTCCCCCCACCTTCGGTAAGCAGCCAGAAGAAAGAAGCC
GCTCGTCCAGGCCACATCAAACGACCGCTCAACGCCTTCATGATTTGGTCGAAGATCGAG
AGGCGAAAGATCACCGAGGCCACGCCCAAGCTTCACAACGCATCAGTGAGCAAAGAACTC
GGCGCTCGCTGGAAGCTACTCTCAGAGCAAGAGAGNCATATCTACGTCGTNGAAGCGGAG
CGATTGCGGCTGCAGCACATGCGCGACCACCCCGACTACAAATACAAGCCACAGAAACGC
ACCAAGAGCACCTCCAAGAAAGACTTTGACGGAGATGCGCCAAAAAGCAAAAGCCCAAAA
TTGCAAAATGACGTCACAAACCACGATAATACCGTGGTAGTAGTCACACAGCCAAGCGAC
TATGTTACGTCACAACAGCAAAACCAGCAAACAGCGCTACTCAAGCGTAAAAAATCGTAC
CCCGCGAACTTACCAACAGTGGTGACGACAATCCCCGAGCAGCACCAGCAGTCGACCATT
GAGTCACCGACGCTCAAAGCTCTGCTCGCGCCATCAATGGGTGCTACCAATGACAACTTC
ATGACGAACTCACCAGTATACGTCAAATTCGAACAGCAACAACACTGTGACGTCATTCCT
CAAGTACAAACGAACTGTCAGTACCCGGCCCAGGTGAAAATCGAGCCCCAATACGAACAA
TATGTAATATCAGACAATGGGGCGAGGCTGGCTTGCTTGCAAACCGCCCAACCTGCCACG
AACTGCTACACCCAGTACAACCAGCAGCCCCAAATGACGCAGCAATACCAACCCCAACAA
GTCGTGACGTCAAGTCCACCTCAACAGTTTTTGACGCCATGCCAACCGCAACAGACCATG
ATGTCATACCCACAACAAACATTCGTGACGTCAAACCCCCAACAAATGATGTCACCGCCT
GACTACTCGTATACGTCGGACTCAACGCAACATGAACTAGAAGAGTTCGACGCCATCTTG
GAAAGTTTATACGGCCCGACAAAGGTGAGTCAGTATTTCTGA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[208-295] 2.49E-24 |
| PANTHER |
SOX-11 (IPR029551) - T[223-475] 9.9E-41 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[224-306] 9.8E-26 |
| SMART |
HMG_box_dom (IPR009071) - T[225-295] 2.3E-22 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[226-294] 19.85 |
| Pfam |
HMG_box_dom (IPR009071) - T[226-294] 9.1E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX14_HUMAN | 59.524 % | 120 | 3.51E-31 |
| SOX11_HUMAN | 64.557 % | 123 | 2.77E-30 |
| SOX4_HUMAN | 63.75 % | 122 | 6.54E-30 |