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  1. Transcript 'Boleac.CG.SB_v3.S15....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S15.g03013.01.t

Possible name(s)

RARA; RARB; RARG

Location

S15 [450,663 / 461,668]

Sequences

Amino acid sequence

Length: 325

>Boleac.CG.SB_v3.S15.g03013.01.p
MNMVQFQEQWRNTMNGILTDMFTGGGGGLMMDTAQPPMHLSHRQSNGHPGMPGIVYNQSH
PVSMSFPHNQPQMTSQQVHGNSYNTPYYSWDYSSRSSPDSVGLSSASSNASGSESEGVMH
GYSQQPPSPPPPPRVYKPCFVCGDKSSGYHYGVASSVRNDRNKKRGKEKDGKAGETSPSG
NSVKSEDIAVSPEVENIVTLVSKAHLDTFPKMEDLNKYNCFFRICSRYDASNDTMSFSDG
LTLNRTQLQSCAFGPMTEQVFGFAKSLTPFELDHTEGGLLCAICLICAGADRAMAIKKSN
ASMPPLMSEMLDDEEAHQQQEQKEE

Nucleotide sequence

Length: 2,587

>Boleac.CG.SB_v3.S15.g03013.01.t
CGTACCATCCTCATGACTAACTGGTTCACTTGTGATTTTCTATGTCCTCAGAACTAATTT
TATTATAAGTTTGTCGAAGTTAGACTATATTCAAGTGCACGACGGTCACCCGTCGGCTGA
ATTACACAAAATCATGAACATGGTTCAATTTCAAGAACAATGGCGGAATACAATGAATGG
CATACTAACTGATATGTTCACTGGTGGAGGTGGTGGCCTTATGATGGACACCGCCCAACC
TCCAATGCATTTGAGTCATCGTCAAAGCAATGGACATCCTGGAATGCCTGGAATTGTTTA
TAACCAATCGCATCCCGTCAGTATGTCATTCCCACACAACCAACCACAAATGACTTCGCA
ACAAGTCCACGGAAATAGCTACAACACGCCGTATTATTCATGGGATTATTCGTCCAGATC
GTCACCAGACAGTGTCGGTTTGTCATCAGCCAGCAGTAATGCGTCCGGTTCTGAATCAGA
AGGCGTAATGCACGGTTATTCTCAACAACCTCCATCACCACCACCACCCCCAAGAGTATA
CAAACCTTGTTTTGTATGTGGAGACAAGTCATCCGGATATCACTATGGCGTTGCATCTTC
CGTGCGCAACGATCGTAACAAGAAAAGGGGGAAAGAAAAAGACGGCAAAGCGGGAGAGAC
TTCACCGTCCGGAAACTCGGTCAAATCAGAGGATATCGCCGTGTCGCCAGAAGTTGAAAA
TATTGTGACACTTGTGTCTAAAGCACACTTGGACACTTTCCCTAAAATGGAGGATTTAAA
CAAGTACAATTGCTTTTTCCGAATCTGCAGCCGGTACGATGCTAGTAACGACACAATGTC
ATTTTCCGACGGTCTAACTCTCAACAGAACGCAACTTCAAAGTTGTGCATTCGGCCCCAT
GACTGAACAGGTGTTTGGTTTTGCTAAGTCACTGACGCCGTTTGAGCTTGACCACACAGA
AGGTGGTTTGTTATGTGCCATTTGCTTGATATGTGCCGGAGCGGATCGAGCCATGGCTAT
CAAAAAGTCGAATGCGTCAATGCCACCGCTCATGTCAGAAATGTTAGATGACGAAGAAGC
CCATCAGCAACAAGAGCAAAAAGAGGAATAAGAAAGTTCCATCACGTCAAAAGTGCTGTC
CAACCCCAGCATGGCATTGCACTCGGTCCTGTAGAATCACCGGTCTGTGGCGCTCTCAGT
AGACATTTGGATATATGCGTGGCTACGATCAGTTGACCACGCCTCCAAACGTAGTGTCAA
TCATCTTTTCATAAACAGAGTATTGTACGGATACTTTATTCTTGCCTTAATGACATCACA
GGCCGCGGATTTTCTGAAACATGTATATTGCAACTTTCCGATTCGCGGCATTTTTTCTCG
TTGTTATGGCAATATTATTTTTCTTCCCTTTGTTGTCGCTTGATTTAAATGATTGGTATT
GTTTTATTTTCGAATTTTATTATATGGTTTATTTCTGTTGTCATTTTCTGTCTGTTTTTT
CGAGTCATTTCAACTCAACGGGTGTGATTTGAATAATATCGGTCGAAAAGAGCAAAAGTA
TTTTCACACTCTCGGCAATTCGTTGCATTGTGAGCTATTCTTTTTGAGCACGAAAGGTTG
AATTTTGGCTTGTCATGTTTTGGCAACGCCTCAGCCGTTCGGTTTTGACGCTCCTGTACT
TTCATTAACGGGTGGTTATGTATAGTCACTTTTCCAATTGGTGTTCCCTCCACGGAATTA
TTGTGTTTCAGTGCCTTTTCATTGCCCCCTCCATCCCCCCTAGTGTTCTTTGATTGAACA
TTGTCCTGCCACGGAAATATGTTAGTATCGTTCTCTACATCAAGCTCCTTATGCCCGTCC
TATCATTTTGCATTTCACTTTCGCGGATGGATGGTCTGTCTGGTAATGTTCGATCATTAT
TACATTACCACTCCGTTGATCATTCGTGGGTCTTACCGATATTCTTTCCCATGTGATGTG
ATGTAATTGTATGATAAAGCCGTCATTATGGCGAATATGAGATTGGCTGTACCACTGACC
TCATAAGCTTTATCCATATCTCTGTAAATTTCTGTCGTCGATATCTACCGAGTTCCATGT
CATTTGGTCGCCCGTGTTTTCTTTGTAAGGCTGCTGTTTTGCGCTGGATCTTATGAACGT
ATAGTGATCAAAAGACCGTGCCTGACAATGATTTTGATCCTAAAGNCCTGTCTGGTAGTT
TTACTGAAAGCAAACTCATTTTGGTAGTGTACGAAACGAATGTNGCGAGCGTACAGCTGT
ACGGGACCGATGCGTTTTAACATCGCATGAAATCTGGTTACTAAACTCGTTGCGTGCGCT
ATCAATGTAAACAAGACCATGACTCTTGTTTGCAGAAATTATGATAGAATGTTTTCGCTA
TTTGGCACAGTTTTCATTCTTTTGTGACTTTGAACGTGTTCGTTTACCGCGGGTTTTATA
TTGCTGTACCTGAGGTTGTCATGTTTTCTTGGCATCCTTGTAAGGCTCTTTCGTACCTTA
CAAAGCGTGATTGTTCTTGATTGAATTTTCATATGGAGTAAATTCTATTGAGCGGAAGTT
GTTTTGC

InterProScan

Pfam
Znf_hrmn_rcpt (IPR001628) - T[138-155] 1.6E-4
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[157-313] 9.05E-16

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RARB_HUMAN 34.078 % 101 5.87E-24
RARG_HUMAN 49.474 % 98.2 6.66E-23
RARA_HUMAN 48.936 % 96.7 2.58E-22