Aniseed - Transcript Card

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S1552.g03193.01.t

Possible name(s)

TNC; TNR; TNXB

Gene model

Boleac.CG.SB_v3.S1552.g03193

Location

S1552 [28 / 2,337]

Sequences

Amino acid sequence

Length: 189

>Boleac.CG.SB_v3.S1552.g03193.01.p
MSNRKTKKVYCDMRTDGGNWIIFQRRMNGDVDFFRGWDNYVDGFGDLRGDFWMWLGTIRQ
LTRDGGMELRIDMIQDDGTHLFAMYSEFQVGPASDNYRLTAKRYSGNATDCLAHLNGRQF
STKNRDNDASSRNCAVSHKGGWWFGSCIHSVLNGIFGSTGWDGIIWRDVARSYALRTMSF
SEMKFRESF

Nucleotide sequence

Length: 817

>Boleac.CG.SB_v3.S1552.g03193.01.t
GGCCATTTCGAGAAACGAAACCGGTGGCGTTTATGAAATCTACATGTCGAACCGTAAGAC
AAAGAAGGTCTACTGTGACATGAGGACGGATGGAGGCAATTGGATTATCTTTCAGCGAAG
GATGAACGGCGATGTTGATTTCTTCCGAGGCTGGGACAATTATGTTGACGGCTTCGGAGA
TCTGAGAGGCGATTTTTGGATGTGGCTGGGAACAATCCGTCAGCTAACAAGAGATGGAGG
GATGGAATTAAGAATCGATATGATTCAAGACGATGGGACTCATTTGTTTGCAATGTACAG
CGAATTTCAAGTCGGTCCTGCTTCAGACAACTACAGGCTGACCGCCAAACGATACAGTGG
TAATGCAACCGATTGCCTCGCTCATCTTAACGGCCGACAATTTAGTACGAAAAATAGAGA
CAATGATGCCAGCTCCAGGAATTGCGCGGTCAGCCACAAGGGTGGCTGGTGGTTTGGATC
TTGCATCCACAGCGTTCTAAATGGAATATTCGGATCAACTGGTTGGGATGGAATTATCTG
GCGAGACGTGGCCAGGAGCTACGCATTGAGAACCATGTCTTTCTCCGAAATGAAATTCCG
CGAATCCTTTTGAAGACTTCTATGTCTTTACTAGTTTTAAAACCTGTTTTAAAAATAAAA
CAAGGAGCTCAACAACGATCCAGTATAGCTAAAATTCCATGTAATTGCTTGTGAACGGCC
GTAACCCGGCACTGAAAGAAACTCGTTCAAAAGGTCATGACGTCCTCGCACGAGCTGTTG
CAAGATAAAAGCATGACGCCCGCGTCTTCGATCTTGT

InterProScan

Gene3D	Fibrinogen_a/b/g_C_1 (IPR014716) - T[1-112] 6.0E-41
ProSiteProfiles	Fibrinogen_a/b/g_C_dom (IPR002181) - T[1-189] 41.734
SMART	Fibrinogen_a/b/g_C_dom (IPR002181) - T[1-188] 9.8E-57
CDD	Fibrinogen_a/b/g_C_dom (IPR002181) - T[2-187] 1.85239E-76
Pfam	Fibrinogen_a/b/g_C_dom (IPR002181) - T[3-186] 5.1E-50
SUPERFAMILY	Fibrinogen-like_C (IPR036056) - T[5-187] 3.4E-60
Gene3D	Fibrinogen_a/b/g_C_2 (IPR014715) - T[113-175] 5.4E-19
ProSitePatterns	Fibrinogen_CS (IPR020837) - T[142-154] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TENA_HUMAN	41.622 %	158	3.93E-45
TENR_HUMAN	45.109 %	166	8.33E-48
TENX_HUMAN	39.665 %	158	6.49E-45