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TRANSCRIPT CARD

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  1. Region 'REG00000787' > 
  2. Transcript 'Boleac.CG.SB_v3.S104...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S104.g00650.01.t

Possible name(s)

PCF11; RPRD1A

Gene model

Boleac.CG.SB_v3.S104.g00650

Location

S104 [141,585 / 152,273]

Sequences

Amino acid sequence

Length: 1,422

>Boleac.CG.SB_v3.S104.g00650.01.p
MTQTVAAEEYKTSLEDLTFNSKPHINALTMLAEEYQDEARVIVRVIEEKLDKALPNCKLP
LMYLMDSIVKNVGGNYKPLFAQNIVKSFMSTFQQGDDKIKLSLYKLRSTWDNHLPLKRLY
DLDVAVQALDSNWPVKPLPASLQEKASTSIHVNPKFLKTDSVPASNATSRITSSKTSAVY
ESSDLKQDLINKQKQLLELQQQKLLLELEQTKQQLAMREKKTLEKKQGKVTAKDPRVKQA
SAARPGMRGSVNGTAESRDPRVALTSAKSKADTKKAPAEVIRKQGDAKKSEEPKAVEKKT
SPSNSEKIEKKKKGPNNTTKMIVAKTNKQPPKSPKSDSVVKKTASKKSTGKAVKRNSQES
KMDEPMKSKSNKSKDKTXRRPGEGAMSPRFSPEPDESPGRNSWAPSVKRRRHQDLPHQPP
PAHIPPGREPPRIQRRTSVDPNLTIPQELSLTHQAEIMKQADIQLQTGQLTHTQHQELLK
QLHQLFQLQRLRNSVPGPDVHRMPLDDLLPPLPEHMTRNDEFRPPMHFREEYPQTFRPLP
SPPRLGDDPRSARPLRERNLTPPPHPPMDPRRSRERSEDKRPMRDYHDPRSRILNEPGRR
PSPPHRQRNAGWDEDNMMDHRDMGTDLGNIYILDDDQEARIPQRPHDPDLRERDQTIHDL
NNGTGPSNRVPLRSYADNDTSHERRPSFDGSNPPDNHDDAINERSVPQTKVDSENEYEGP
HFEEPEDYIIANIPPGAEAYHEHSMKLKGRNKVSASMIATRKLSDAGKEQDSGNEKIENL
DAGLMSPDSTRDKSEDIEDLTKSPSLPLKKRKYVVSPGRVEDPDAANEPEVEIQVKEQDP
SDTSQKRIPEVDQRSAIDEEKIKTESVVDDSALLKSEKADGSXAVKYDDDKSGVDRKDSE
TSNEMDTVIKKEPEDKTAETSGLIKPEKAPRPSQIKKKSNKERIRPLLSAANAEPXKKKR
KRNDKAKAKDRKPAQALPQLLRHPXEENIAKLEEERRLNQLMIEEEERLRWEAQLEMELG
REEFQERERIGRGRRGSPPRMMWPRDDGPWRGXGGRPPLGRGRRFERGFWDNEPPPHFAD
RLPPNRPPPLPRRLIDEREWNRXDEPRHDRPPMLRPPPGRDWPPRGPPRGPPSPRRLLPP
ERPQPPADLNQVNVNKLLSDLLSMGIIPGQGKTNDTEKPAEAPNEKKLEENRVPTPVFXD
LLTVDPNANLPDFELRDTEKLKIRNEDVIARLYTGIQCSACGMRFTACQTDMYAEHLDWH
YRLNRKDKEGVRETHRELYPSAGEWIMYEEIADPSRRDKSQVFDGEEEEEVEEEXTNDLQ
NENELAVPVAKNPEQDKCAVCXEAFTTIYNDEEEEWQYINCVAVDGKNFHPACYADHNDP
DDETVPPPPTPVRVPIYNPLSVDASGIPGLDSLSKEIPDEDV

Nucleotide sequence

Length: 4,593

>Boleac.CG.SB_v3.S104.g00650.01.t
ATTACACACGCATAAACGCACCTGCGGCCTGGCCTCAATATATCGGGTACTGAGGAACCA
GAAAGCTACTCATGTGAAAACAACAATGACTGCGCCGAGTCTAGCATAGAAGTTGGGTCA
CGTGGTGTGACGTCAGAGNACCTCAAGTCTCGCCATTTTTGAAGAACGTCACCGAGTCGT
CTGCAACAAAGAATCGTGCCAGCGTTTGCGACTGCATTGCGGTGATCGTATCGAGTNTTT
TGAAATGACTTGAGTTCTGCATCCTGCACCAACTTTCGAAGCGTCGATTATAATATTCTG
TGTTTGTGAAGATAACCCGAAACCAGCATGACGCAGACCGTCGCCGCTGAAGAATACAAA
ACGTCTTTGGAAGACCTTACGTTCAATTCCAAACCACACATCAACGCGTTGACGATGCTT
GCCGAAGAATATCAGGATGAAGCTCGCGTTATCGTCCGAGTAATTGAAGAAAAGCTGGAT
AAGGCTCTTCCAAATTGCAAGCTGCCGTTAATGTATCTCATGGACTCGATAGTGAAGAAC
GTCGGCGGAAATTACAAACCACTCTTTGCACAAAACATTGTGAAAAGTTTCATGTCAACA
TTTCAGCAGGGGGATGACAAGATTAAACTGTCACTGTACAAATTGCGTTCAACTTGGGAT
AACCATTTGCCTCTGAAGCGCTTATATGACCTTGATGTTGCTGTCCAAGCACTGGATTCG
AATTGGCCAGTCAAGCCATTGCCTGCAAGCTTGCAAGAGAAAGCTTCGACTAGCATACAC
GTTAATCCAAAGTTTCTGAAGACTGATAGCGTGCCAGCATCCAACGCAACATCAAGAATC
ACTTCAAGCAAAACGAGTGCGGTGTATGAGAGCTCTGATTTGAAACAAGATCTCATAAAC
AAGCAAAAACAATTGCTGGAGTTACAGCAACAGAAACTGCTCTTGGAACTTGAGCAAACC
AAACAACAGCTAGCAATGCGAGAAAAAAAGACATTGGAAAAGAAGCAGGGTAAAGTGACG
GCCAAGGATCCAAGAGTAAAGCAAGCATCTGCTGCNCGACCAGGTATGAGAGGCTCTGTC
AATGGAACAGCGGAGTCACGAGATCCAAGAGTTGCACTCACATCTGCGAAATCTAAGGCT
GATACCAAAAAGGCACCTGCAGAAGTAATCCGAAAGCAGGGGGATGCTAAGAAATCAGAA
GAGCCCAAAGCTGTNGAAAAGAAAACGTCTCCTTCAAACTCGGAGAAAATTGAGAAGAAG
AAAAAAGGTCCAAATAATACCACTAAAATGATAGTTGCAAAGACGAATAAGCAACCACCC
AAAAGTCCGAAGTCAGATTCAGTGGTCAAGAAAACTGCGTCGAAGAAAAGCACGGGTAAA
GCTGTAAAGCGAAATTCACAGGAAAGCAAAATGGATGAGCCAATGAAATCAAAGAGCAAT
AAAAGCAAAGACAAGACTNTCAGGAGGCCGGGTGAAGGGGCAATGTCACCAAGATTTTCT
CCAGAGCCCGATGAATCTCCTGGGCGTAATAGTTGGGCTCCTTCTGTGAAAAGACGAAGA
CACCAAGATCTACCTCATCAACCACCACCTGCCCATATTCCACCAGGTCGTGAACCACCA
AGAATTCAACGGAGGACAAGTGTAGATCCAAATTTAACGATTCCTCAAGAGTTGAGTTTG
ACTCATCAAGCTGAAATCATGAAGCAGGCTGATATTCAATTGCAAACNGGGCAACTTACA
CATACTCAACATCAAGAGCTATTGAAACAACTGCATCAGTTATTTCAGTTACAGAGATTA
CGAAATTCTGTTCCCGGGCCTGATGTTCATAGGATGCCATTGGATGACCTTCTGCCTCCC
CTTCCTGAACATATGACCCGTAATGACGAGTTCAGACCTCCAATGCATTTTCGAGAGGAA
TACCCACAAACTTTTCGCCCTCTACCATCGCCTCCAAGATTGGGAGACGATCCTCGCTCG
GCGCGTCCACTTCGCGAGCGCAATTTGACGCCTCCTCCTCATCCGCCAATGGATCCAAGA
AGAAGTAGAGAGCGTTCCGAGGATAAGAGACCAATGAGAGACTACCATGATCCTCGNTCA
AGGATCCTTAACGAACCNGGAAGAAGGCCTAGTCCTCCACACCGGCAACGAAATGCAGGA
TGGGATGAGGATAATATGATGGACCATCGTGATATGGGGACTGATCTTGGGAATATTTAC
ATTCTTGATGATGACCAGGAAGCTCGCATTCCTCAAAGACCACATGATCCTGATTTGCGT
GAACGAGATCAAACTATCCATGACTTGAACAATGGNACAGGACCATCAAATAGAGTACCA
TTACGATCCTATGCAGACAATGATACTTCTCATGAGAGAAGGCCTTCATTTGATGGCAGT
AACCCACCAGACAATCACGATGATGCAATAAATGAACGTTCAGTACCTCAAACGAAGGTC
GATAGTGAAAATGAATATGAAGGCCCGCACTTTGAAGAGCCAGAGGACTATATCATAGCA
AATATTCCCCCTGGAGCTGAAGCGTATCATGAACATTCCATGAAGCTTAAGGGAAGAAAC
AAAGTGTCAGCTTCCATGATAGCCACTCGAAAGCTTTCNGATGCTGGTAAGGAGCAAGAT
TCGGGCAACGAGAAGATTGAAAACCTCGATGCAGGTCTAATGTCCCCCGACTCGACCCGT
GACAAATCTGAGGACATTGAGGATTTAACAAAGTCTCCTTCTTTGCCTTTGAAGAAGAGA
AAGTATGTGGTGTCGCCTGGTCGTGTTGAGGACCCTGATGCAGCTAATGAACCAGAAGTC
GAAATCCAAGTCAAAGAGCAAGATCCCTCTGATACATCACAGAAGAGAATACCTGAAGTA
GATCAACGTTCTGCAATTGATGAAGAGAAAATTAAGACTGAAAGTGTGGTTGATGACTCG
GCACTTTTGAAATCTGAGAAAGCTGATGGCAGCANNGCAGTAAAGTACGATGATGACAAA
TCTGGAGTTGACCGGAAAGATAGTGAAACCTCCAACGAGATGGATACTGTTATCAAAAAG
GAACCAGAAGACAAAACTGCCGAGACATCTGGACTTATCAAGCCTGAAAAAGCTCCTCGG
CCATCACAAATCAAAAAGAAATCTAATAAAGAACGGATCCGGCCATTGTTATCTGCTGCC
AATGCTGAACCAATNAAGAAAAAGCGAAAGAGAAATGATAAAGCCAAAGCCAAAGACAGA
AAACCTGCTCAAGCACTGCCTCAACTGCTAAGGCACCCANCTGAAGAAAACATTGCTAAG
CTGGAAGAAGAGAGAAGACTCAACCAGTTGATGATTGAAGAGGAGGAAAGGTTGAGATGG
GAAGCTCAGCTTGAAATGGAATTAGGCAGGGAAGAATTTCAGGAACGAGAAAGAATAGGT
AGAGGAAGAAGGGGAAGTCCACCACGAATGATGTGGCCAAGAGATGATGGTCCATGGAGA
GGTCNAGGTGGGCGTCCACCCTTGGGGCGAGGCAGGAGGTTTGAAAGGGGTTTCTGGGAC
AACGAACCTCCACCACATTTTGCTGATAGACTGCCTCCAAATAGGCCACCACCTCTTCCA
CGACGCTTAATTGATGAACGGGAATGGAATCGCNGGGATGAACCACGACATGATCGACCN
CCAATGCTCAGACCTCCACCTGGAAGAGATTGGCCTCCACGAGGACCTCCCAGAGGNCCT
CCTAGTCCAAGGCGTTTATTACCACCNGAAAGACCACAGCCACCGGCTGATTTGAATCAA
GTCAATGTCAATAAACTCTTGAGTGATCTCCTCTCCATGGGTATTATACCTGGTCAAGGA
AAAACTAACGACACNGAGAAGCCTGCCGAAGCACCTAATGAGAAGAAGTTGGAGGAGAAT
AGAGTTCCTACTCCGGTATTTGANGATCTACTAACTGTAGATCCCAATGCAAATTTACCT
GACTTTGAACTTCGGGACACGGAAAAGCTGAAAATTCGTAATGAAGATGTGATTGCTAGG
TTGTACACCGGAATTCAATGTTCTGCCTGTGGGATGCGTTTTACCGCTTGCCAGACAGAC
ATGTACGCCGAACATCTAGACTGGCATTATAGGCTGAATAGAAAAGACAAGGAAGGAGTA
CGTGAAACACATCGCGAACTTTATCCATCAGCAGGAGAATGGATTATGTATGAAGAGATT
GCTGACCCTTCACGACGTGACAAAAGCCAAGTGTTTGATGGAGAAGAAGAGGAGGAGGTT
GAGGAAGAGANAACTAATGATTTGCAGAATGAGAATGAACTGGCCGTACCAGTTGCTAAG
AATCCTGAGCAAGATAAATGTGCTGTTTGCAANGAAGCTTTCACGACTATCTATAACGAT
GAAGAAGAGGAATGGCAATACATTAATTGTGTAGCAGTCGATGGCAAAAATTTCCACCCT
GCTTGTTATGCTGACCACAATGATCCGGATGACGAAACTGTTCCTCCTCCACCGACACCA
GTTCGTGTGCCAATCTATAACCCTCTCAGTGTTGATGCTAGCGGAATCCCAGGCCTTGAT
TCCCTATCAAAGGAGATTCCAGATGAAGATGTG

InterProScan

Gene3D
ENTH_VHS (IPR008942) - T[1-128] 2.6E-36
ProSiteProfiles
CID_dom (IPR006569) - T[2-130] 32.978
SMART
CID_dom (IPR006569) - T[5-127] 2.8E-20
SUPERFAMILY
ENTH_VHS (IPR008942) - T[6-138] 1.57E-36
Pfam
RNA_pol_II-bd (IPR006903) - T[58-112] 5.2E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PCF11_HUMAN 41.026 % 209 2.16E-54