- Transcript 'Moocul.CG.ELv1_2.S31...' >
- Transcript 'Boleac.CG.SB_v3.S101...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S101.g00437.01.t
Possible name(s)
CHRNA1; CHRNA3; CHRNA6
Gene model
Location
S101 [99,252 / 104,169]
Amino acid sequence
Length: 478
>Boleac.CG.SB_v3.S101.g00437.01.p
MELSWVTVLAVLLILCSAAVEAKSNVSITQHITEDYDRRVRPAEGFTESVKVIFKLSLNQ
LLDVSEVSQKIQTKLWLYHQWVDRRLTWDPSEYGGIKYTHLPAEKLWLPLFVLYNNADGD
FAITDMTKAKVHHNGTIEWMPPVIFSSFCEIQVANFPFDTQNCTMKIGPWTSGMDLLDMV
NTDRMVKDHICEKPDLGNYVTNGEWKLLSTGCYKHYIRYECCAGPYVDMTYHFVIQRRPL
YLLMNILFPTMLFSLLTCTVFYLPSDAGEKMTLSVSLLLSLVVFLLVIVEAIPSTAKGVP
LLGKYILFTMILVTLSIIXTVFVLNVHYRSPSTHEMPDWVKQVFMVYLPKFMLSSTIRTI
DPFAEDKSADEXKIFYKDISAISGRDEVSGAPYLLNPDINDAIEGIRLVAEHFKDDEEGN
REQTEWKYVAMVMDHFLFYIFIVACLLGTIFIFAERLIELNSEEYSFKNNDGTCLLNC
Nucleotide sequence
Length: 1,861
>Boleac.CG.SB_v3.S101.g00437.01.t
ATCCAGTAACCTTATCATAGAGTATCGTTCGCTCATTAGTACTCTGGTGTGATTATCTTG
AGGTGCTGAAAGCAAAGCGAGGCTGCTATTTTGTCACAGTTACCGGCTTCAGTAAGATGT
AAATTCGAATACAATGGAACTTAGTTGGGTTACCGTCTTAGCAGTCTTACTAATCCTGTG
CTCAGCAGCTGTGGAAGCGAAAAGCAATGTTAGTATCACACAGCACATAACTGAAGATTA
CGATAGAAGAGTTCGACCGGCAGAAGGTTTCACCGAAAGCGTCAAAGTGATTTTCAAACT
GTCGCTGAACCAACTTTTGGATGTCAGCGAAGTATCGCAGAAGATTCAAACAAAATTGTG
GCTTTATCATCAATGGGTCGACCGGCGTCTGACATGGGACCCGTCAGAATACGGGGGAAT
TAAATACACCCACCTTCCAGCCGAAAAGCTCTGGCTGCCACTCTTCGTATTGTATAATAA
CGCTGACGGTGATTTCGCGATCACGGATATGACGAAGGCAAAAGTGCATCACAACGGAAC
GATAGAATGGATGCCGCCGGTTATTTTCAGTAGCTTTTGTGAAATTCAGGTAGCGAACTT
TCCATTCGATACTCAGAACTGCACAATGAAAATCGGACCTTGGACATCTGGAATGGATTT
ACTCGATATGGTTAACACAGACCGGATGGTCAAAGATCATATTTGCGAAAAGCCGGATTT
GGGAAATTACGTTACTAATGGGGAATGGAAGTTACTCTCAACCGGATGTTACAAGCATTA
CATCAGATACGAATGCTGCGCTGGCCCGTACGTGGACATGACCTACCATTTCGTCATTCA
ACGCCGTCCATTGTATCTACTAATGAATATTCTATTCCCTACAATGCTGTTCTCACTGCT
GACTTGTACCGTTTTCTATCTTCCGTCTGATGCGGGAGAAAAAATGACGCTCAGCGTATC
CCTCCTTCTCTCCCTCGTCGTGTTTCTGCTTGTAATCGTGGAAGCTATTCCGTCCACGGC
TAAAGGTGTCCCGCTGCTNGGAAAATACATTCTTTTCACCATGATTCTAGTGACTCTGTC
CATTATAATNACTGTATTTGTTCTGAATGTCCATTATCGCTCCCCGTCAACGCATGAAAT
GCCTGATTGGGTGAAACAAGTGTTCATGGTGTATTTGCCGAAGTTCATGTTGAGCTCTAC
CATTAGAACGATCGACCCATTCGCAGAAGACAAGTCGGCAGATGAAAANAAAATATTTTA
CAAAGATATCTCTGCAATCTCTGGAAGAGACGAAGTGTCCGGAGCTCCATATTTATTAAA
TCCCGACATCAATGATGCAATCGAAGGAATACGTCTGGTAGCGGAACATTTCAAAGACGA
CGAAGAAGGCAACAGGGAACAAACAGAATGGAAGTACGTTGCTATGGTGATGGATCATTT
TTTATTTTATATCTTTATTGTGGCTTGTCTTCTGGGAACTATCTTTATTTTTGCTGAACG
ACTCATAGAGTTGAATTCTGAAGAGTACAGTTTCAAGAACAACGATGGGACNTGCTTGTT
AAATTGCTAAAACCATGATAATGAGGCAACTTGATACGGAAAGGCCATCGATAGAGTGCG
GTCCAACAGAACACCACTTTATCCGTACCATCGTGAAGGCCTTAACCATCTACAAAGTGG
TACAGAACTGAATGCAGGTTATACAATTCTGTATTTGCGTTGCATTGTGCTCATGATACA
GGACTTTATTTGCTTGACACAAAATCTTAGTTCGTCTTTTAATTAAATGGATTTCTTGTT
GGAACAAATTTGTTCGAGGGAAGTATCGAAATGAGTGTTGAATGCTATGGCGTCGGCCTA
C
| PANTHER |
Neur_channel (IPR006201) - T[1-453] 4.9E-126 |
| TIGRFAM |
Neur_channel (IPR006201) - T[5-453] 8.1E-88 |
| Gene3D |
Neur_chan_lig-bd_sf (IPR036734) - T[26-242] 1.5E-73 |
| SUPERFAMILY |
Neur_chan_lig-bd_sf (IPR036734) - T[28-239] 5.49E-61 |
| Pfam |
Neur_chan_lig-bd (IPR006202) - T[28-239] 1.1E-63 |
| PRINTS |
Nicotinic_acetylcholine_rcpt (IPR002394) - T[59-75] 6.0E-17 - T[93-107] 6.0E-17 - T[111-123] 6.0E-17 - T[129-147] 6.0E-17 |
| PRINTS |
Neur_channel (IPR006201) - T[72-88] 1.3E-11 - T[105-116] 1.3E-11 - T[149-163] 1.3E-11 - T[233-245] 1.3E-11 |
| ProSitePatterns |
Neurotransmitter_ion_chnl_CS (IPR018000) - T[149-163] . |
| SUPERFAMILY |
Neuro-gated_channel_TM_sf (IPR036719) - T[239-455] 2.09E-60 |
| Pfam |
Neurotrans-gated_channel_TM (IPR006029) - T[247-355] 4.2E-42 - T[390-453] 4.4E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ACHA3_HUMAN | 42.004 % | 377 | 2.06E-126 |
| ACHA6_HUMAN | 39.457 % | 364 | 1.19E-121 |
| ACHA_HUMAN | 45.661 % | 419 | 2.75E-143 |