- Transcript 'Boleac.CG.SB_v3.S100...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S1006.g00417.01.t
Possible name(s)
RABGAP1; TBC1D1; TBC1D4
Gene model
Location
S1006 [11,345 / 14,552]
Amino acid sequence
Length: 1,068
>Boleac.CG.SB_v3.S1006.g00417.01.p
MSEHDTMYSICYMGRAAINSYFSDSMLPWIIGEIELNKRLQXITMCLNTHCIELKRDFVT
RIPSSSGNSVTXPDGLESLSDDLMNFDDINXIEEADXKSPLNXIAMXSTAMETIXXIHFS
KILHTRVIXVRHSSYFVLVVQEDDKPIYCHXFKSDVNVLNIINMDVEKHIKVEGQSGMPC
IXTKSAKGSETPSDNDCVRFEVLLVGVVNLKTPDPPHTLIDQAVAEFEERYKQLXETNAK
NNGVEFGHRPLSPGFIDSGSPNCMIDDSRESSXDMMRQMRQRXSSIGHGNNERPAPXRRX
RXCSEPSVLAGDTRKTRIRLFQIGHSSIKMVCPNKTVRTXEXEFSNISRCMQGIKHRDHF
GMIANTGSNVTKTNQHNHSKQSSIPKKVXCFVFQCSDENICEEIMQGIRQAFATSFNEAS
PMDEFHSLCKEMNSASXEXASLXVARKMKELSDNEVSMLKAQVVEINPKNRQDRLSALMA
ALRRLYXIKHIKHGDDSKSADDLNVXNGIGSPTSKFDNIKSKAMTSFGSLIQKGKKKMLE
LHLDGDHFSEKQATSPVHKIKYFSDGFSTSAPSTPQKNNSVXSTSPQNVYKGLTRSRSRS
TSLGSRPKSLSLSNGDKSDMPLLFYHKIFYGITNTGPSGTSTAAFNYSCATPRKQPRQSL
DTVXDIRKAWKXAIGYQILLNKINAIASPQPVLVXSSSESYEYSELTQISDQMEEVWMEL
FRISLDDKERIDQKVLHAAVKKGVXNSYRGRIWKLLQSHCHHIPTTDNQFDINGYQKLLD
NLTPYQHAILIDIGRTFPTHPMYRQLLGPGQLSLFNVLKAYSLFDKDVGYCQGLSFIAGV
LLMHTCIXDEAYQLLYCIMHEIGXRSMYLPDMKGMKLAMYKMTRLLYXEEQDVFKFFQKH
EITMMLVATPWFLTMFASTFPMGFVARVFDMVFVDGISAIXKVALCLISKHKDMILXLDX
FEDLVNYIKNDVPQSDXQTLMNVIDAAMMISIXSXLQEXETEYRXMSEELPLINYFRESK
KQMEDQIHCLENVNAKVTESNCELLQQLQDAQQKVASLQKQLKNANKH
Nucleotide sequence
Length: 3,207
>Boleac.CG.SB_v3.S1006.g00417.01.t
ATGTCGGAACATGACACAATGTACTCAATCTGTTACATGGGCCGTGCTGCTATCAACTCA
TATTTCTCTGATTCAATGTTGCCCTGGATTATTGGAGAAATCGAACTCAATAAAAGACTG
CAAAANATCACTATGTGCTTGAACACACATTGCATTGAATTGAAACGAGATTTTGTCACA
AGAATTCCTAGTTCATCAGGGAATTCAGTGACAANTCCTGATGGATTGGAAAGTTTATCG
GATGATTTGATGAACTTTGATGACATTAACTTNATCGAAGAAGCTGACGANAAATCACCA
CTTAATANAATTGCAATGCNTAGTACTGCCATGGAAACAATTNTGGANATTCACTTTAGT
AAAATTTTACACACCAGGGTNATTGANGTNAGACACTCTTCATATTTTGTTTTGGTGGTA
CAAGAAGATGATAAACCTATATATTGTCATGNNTTCAAGTCTGATGTCAACGTTCTCAAT
ATCATAAATATGGATGTTGAGAAGCACATCAAGGTTGAAGGTCAAAGTGGGATGCCNTGC
ATTTTNACTAAATCNGCTAAAGGNTCNGAAACTCCAAGTGATAATGATTGTGTAAGATTT
GAGGTTTTGCTTGTTGGTGTAGTNAATTTGAAAACNCCCGACCCACCTCACACATTAATT
GACCAAGCGGTTGCTGAATTCGAGGAGCGATATAAACAATTGGANGAAACTAATGCAAAA
AATAATGGNGTGGAATTTGGTCACAGACCNTTATCACCAGGCTTCATTGATTCAGGCTCA
CCAAACTGTATGATAGATGATTCAAGGGAGAGCTCAANGGACATGATGAGGCAAATGAGA
CAAAGATGNAGTTCCATTGGACATGGAAACAATGAACGCCCNGCACCAAANCGAAGGCAN
CGTCANTGTAGTGAACCGAGTGTGTTAGCTGGNGATACCAGAAAAACCAGAATACGCTTA
TTTCAAATCGGACATTCTTCAATAAAAATGGTNTGTCCAAACAAAACCGTCCGTACNNGT
GAAATNGAGTTTTCAAACATTTCCCGTTGCATGCAAGGGATAAAACATAGAGATCATTTT
GGNATGATTGCCAATACAGGGAGTAATGTTACAAAGACAAATCAACATAATCACTCTAAG
CAATCTTCAATTCCCAAGAAGGTGAGNTGTTTTGTATTTCAATGCTCTGACGAGAACATT
TGCGAAGAAATCATGCAAGGTATCAGACAAGCGTTTGCGACATCTTTCAATGAAGCATCT
CCAATGGATGAGTTTCATTCTTTATGCAAGGAAATGAATTCTGCNTCAANAGAAGANGCA
TCTCTAANNGTNGCAAGAAAAATGAAGGAATTGAGTGATAATGAAGTTAGTATGCTAAAA
GCGCAGGTTGTGGAAATTAACCCAAAAAATCGCCAAGACCGTTTGTCTGCNTTAATGGCT
GCTTTACGTAGACTGTATGANATTAAGCATATTAAACACGGTGATGATTCGAAATCGGCT
GACGATTTGAATGTGANCAATGGCATTGGGTCCCCAACCAGCAAATTTGACAATATCAAA
AGTAAGGCCATGACATCTTTTGGGAGTCTAATACAAAAAGGAAAAAAGAAAATGCTAGAG
CTTCATCTTGATGGCGACCATTTCTCTGAAAAACAGGCCACAAGTCCTGTACATAAAATC
AAGTATTTTTCTGATGGATTTTCAACATCTGCNCCATCTACTCCTCAAAAAAACAATTCT
GTCNTCAGTACATCGCCACAGAATGTATACAAAGGTTTGACCAGGTCNAGAAGCCGTTCA
ACGTCATTGGGCAGTAGGCCAAAGTCGCTCAGTTTATCCAACGGGGATAAAAGCGATATG
CCTTTGCTATTTTATCATAAAATATTTTATGGAATCACAAACACTGGACCCTCTGGGACA
TCAACCGCTGCATTTAATTATTCATGCGCCACTCCACGTAAACAACCCAGGCAGTCACTT
GACACTGTTGANGATATACGGAAAGCCTGGAAATTNGCAATCGGTTATCAGATTTTGTTG
AATAAAATCAACGCCATTGCAAGTCCCCAACCAGTTCTAGTCNGTTCTTCATCTGAAAGT
TATGAATACTCTGAATTAACGCAAATTTCAGACCAGATGGAAGAAGTATGGATGGAGTTA
TTTAGAATATCTCTTGATGACAAAGAAAGGATTGACCAGAAGGTTTTGCACGCTGCTGTT
AAGAAAGGNGTCTTNAACAGTTACAGAGGAAGAATTTGGAAATTATTACAGAGTCATTGC
CATCACATACCTACTACTGACAATCAATTTGATATAAATGGATATCAAAAACTTCTTGAC
AATCTCACACCGTATCAACATGCCATTCTTATAGACATTGGCAGAACATTCCCTACTCAT
CCTATGTATCGACAGTTGTTGGGTCCTGGTCAATTGAGTCTCTTCAATGTCCTGAAAGCA
TATTCACTGTTTGATAAAGATGTTGGATATTGTCAGGGTTTATCTTTTATTGCAGGAGTA
TTGTTGATGCATACATGTATTGANGATGAAGCATATCAACTACTGTATTGTATTATGCAT
GAAATTGGATGNAGAAGCATGTATCTTCCTGATATGAAAGGAATGAAGCTAGCAATGTAT
AAAATGACACGATTGCTGTATGANGAAGAACAAGATGTGTTCAAGTTTTTCCAAAAACAT
GAGATCACAATGATGTTGGTAGCAACCCCATGGTTTTTGACTATGTTTGCTTCGACCTTT
CCCATGGGCTTTGTAGCGAGAGTTTTTGACATGGTTTTTGTCGATGGAATATCCGCGATT
TTNAAAGTAGCACTCTGCTTAATTTCAAAGCATAAAGACATGATACTTCANTTGGATGAN
TTTGAAGACCTTGTGAATTATATAAAGAATGATGTNCCNCAAAGTGACAGNCAGACTTTG
ATGAATGTTATCGATGCGGCGATGATGATATCTATCGANTCAAANCTGCAGGAATANGAA
ACTGAATATCGTATNATGAGTGAAGAGTTACCATTGATAAATTACTTCCGAGAAAGCAAA
AAGCAGATGGAAGATCAAATTCATTGTTTGGAAAATGTGAATGCTAAAGTAACGGAAAGT
AACTGTGAGCTTTTGCAGCAACTCCAAGATGCTCAACAGAAAGTGGCATCACTCCAAAAG
CAATTGAAAAATGCCAATAAACATTGA
| SMART |
PTB/PI_dom (IPR006020) - T[195-425] 2.8E-6 |
| Gene3D |
PH-like_dom_sf (IPR011993) - T[268-414] 7.1E-10 |
| SUPERFAMILY |
Rab-GTPase_TBC_sf (IPR035969) - T[716-888] 2.51E-34 - T[871-983] 1.05E-21 |
| SMART |
Rab-GTPase-TBC_dom (IPR000195) - T[740-959] 1.1E-50 |
| ProSiteProfiles |
Rab-GTPase-TBC_dom (IPR000195) - T[743-936] 27.255 |
| Pfam |
Rab-GTPase-TBC_dom (IPR000195) - T[747-956] 2.8E-45 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBGP1_HUMAN | 29.839 % | 172 | 1.41E-43 |
| TBCD1_HUMAN | 40.976 % | 309 | 1.45E-88 |
| TBCD4_HUMAN | 38.916 % | 301 | 3.02E-85 |