- Transcript 'Cisavi.CG.ENS81.R1.4...' >
- Transcript 'KH2012:KH.C1.1077.v1...' >
- Transcript 'KH2012:KH.C3.330.v2....' >
- >
- Transcript 'Moocci.CG.ELv1_2.S64...'
- Sorry, you are not authorised to access this data
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S647108.g29724.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S647108 [4,519 / 5,800]
Amino acid sequence
Length: 426
>Moocci.CG.ELv1_2.S647108.g29724.01.p
MTDKELLYDEAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTSQWLPDVVKPEGKD
YTIHRLILGTHTSDEQNHLIIASVQLPTDEAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPYIIGTKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLKGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDISSATKERRVLEAKSIFRGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNICKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAD
DGPPELLFVHGGHTAKISDFSWNPNEPWVVCSVSEDNIMQVWQMAENIYNDDEQETGADL
DQQKME
Nucleotide sequence
Length: 1,281
>Moocci.CG.ELv1_2.S647108.g29724.01.t
ATGACGGATAAAGAACTTTTATATGATGAAGCTGTAGAAGAAAGAGTAATAAATGAGGAA
TACAAAATATGGAAGAAGAATACCCCGTTTCTCTATGATTTAGTGATGACCCATGCCCTG
GAATGGCCAAGTTTGACGTCACAGTGGTTACCAGATGTTGTTAAGCCAGAAGGAAAAGAT
TACACAATTCACCGACTTATTTTAGGAACCCATACATCTGATGAACAGAATCACTTGATT
ATTGCTAGTGTTCAGCTACCTACTGATGAAGCTCAATTTGATGCTTCTCATTATGACAGT
GAAAGAGGAGAATTCGGTGGTTTTGGTTCTGTTAGCGGAAAAATTGAAATTGAGATTAAA
ATTAACCACGAAGGAGAAGTGAATAGAGCCAGATACATGCCACAAAACCCTTACATTATT
GGCACAAAAACACCGTCCAGTGATGTACTGGTTTTTGATTATACAAAACATCCAAGCAAA
CCAGATCCCAGTGGTGAATGCAATCCTGATTTGAGACTTAAAGGTCATCAAAAAGAAGGC
TATGGTTTATCATGGAATCCGAATCTTAGTGGTCATTTGTTAAGTGCATCTGACGACCAT
ACAATTTGTTTGTGGGATATCAGTAGTGCAACTAAAGAGAGAAGAGTTCTTGAAGCTAAA
TCAATTTTCAGGGGTCATACAGCAGTAGTGGAAGATGTCTCATGGCATCTTTTACATGAA
AGTTTATTTGGATCTGTTGCTGATGACCAAAAGTTAATGATTTGGGATACAAGAAGTAAC
AATATATGTAAACCTAGTCACACCGTAGATGCACATACTGCAGAAGTTAATTGTCTTTCG
TTTAATCCATACAGCGAATTTATCCTGGCAACTGGTTCAGCAGATAAAACTGTTGCGCTG
TGGGATTTAAGGAATCTAAAACTAAAACTTCATTCGTTTGAATCACATAAAGATGAAATA
TTCCAAGTTCAGTGGTCTCCACATAATGAAACCATTCTAGCGTCTAGTGGTACTGACAGA
AGACTTAACGTTTGGGATTTAAGTAAGATTGGAGAAGAACAATCTGCAGAAGATGCGGAT
GATGGCCCTCCTGAATTATTGTTCGTACATGGAGGTCACACAGCTAAAATATCTGATTTT
TCATGGAACCCAAATGAACCTTGGGTAGTCTGTTCTGTATCAGAGGACAATATTATGCAA
GTTTGGCAGATGGCTGAAAATATTTATAACGATGATGAACAAGAAACTGGTGCAGATTTA
GATCAACAGAAAATGGAATAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-424] 3.5E-168 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[19-87] 2.1E-27 |
| SMART |
WD40_repeat (IPR001680) - T[112-153] 75.0 - T[166-206] 3.1E-6 - T[216-256] 0.021 - T[262-302] 1.0E-8 - T[306-346] 7.0E-7 - T[363-403] 1.9E-4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[114-408] 7.33E-53 |
| Pfam |
WD40_repeat (IPR001680) - T[173-206] 0.044 - T[221-256] 0.13 - T[264-302] 1.7E-7 - T[310-346] 3.4E-4 - T[367-402] 0.0014 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[173-215] 13.015 - T[223-265] 9.138 - T[269-305] 13.85 - T[313-355] 12.948 - T[370-404] 9.138 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[173-412] 36.49 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[193-207] 1.4E-8 - T[289-303] 1.4E-8 - T[333-347] 1.4E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[193-207] . - T[289-303] . - T[333-347] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.664 % | 121 | 2.3E-30 |
| RBBP7_HUMAN | 84.434 % | 763 | 0 |
| RBBP4_HUMAN | 89.835 % | 804 | 0 |