Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C3.736.v1....'
  2. Transcript 'Moocci.CG.ELv1_2.S64...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S646988.g29693.01.t

Possible name(s)

SOX13; SOX5; SOX6

Location

S646988 [30,723 / 33,256]

Sequences

Amino acid sequence

Length: 326

>Moocci.CG.ELv1_2.S646988.g29693.01.p
MVGLPDNTLSVRLLYISRLYGTHERPLNLSSSRVKEESGSEEEKVRDTFSHFSSEQSKYG
EIADILQRRAALGLAKDKNNNMLFSSAVNHTAEYFPYMNAESPKRSNEMYSPTEQSKYSQ
QSEDLGQSEPRMVRDSKRAETHIKRPMNAFMVWAKDERRKILQAYPDMHNSNISKILGAK
WKKMSNLDKQPYYDEQARLSKSHLEKYPDYKYKPRPKRTCIVDGKKLRISEYKALMKMRK
NEFRGGIYGSSSGSSPPSMPYPSPPTMVSSAYNFPTSGAPTLNSAAMSSLNHLSPGLNPY
NLPLNLEHGQDSQSRDSRSASPQGDA

Nucleotide sequence

Length: 981

>Moocci.CG.ELv1_2.S646988.g29693.01.t
ATGGTTGGTCTGCCAGACAATACACTTTCTGTTCGCCTGTTATATATATCGCGATTATAT
GGTACCCACGAAAGGCCATTGAACCTTTCGTCGTCACGTGTAAAAGAGGAGAGTGGGAGT
GAAGAGGAAAAAGTGAGAGACACTTTCTCTCACTTTTCCTCAGAGCAGAGCAAATATGGA
GAAATAGCTGACATTTTGCAACGAAGAGCGGCTTTGGGCTTGGCGAAGGATAAGAACAAC
AATATGCTTTTTTCAAGTGCAGTCAACCATACCGCCGAATATTTCCCTTATATGAACGCA
GAATCACCGAAGCGTAGCAACGAAATGTATTCACCAACCGAACAATCCAAATATTCACAG
CAGAGCGAAGATTTAGGCCAATCAGAACCACGTATGGTTAGAGACTCAAAGAGGGCGGAG
ACTCACATTAAACGGCCAATGAACGCCTTTATGGTGTGGGCTAAGGATGAGCGACGAAAA
ATACTCCAGGCTTATCCTGACATGCACAACTCGAACATCAGCAAGATTCTTGGAGCCAAG
TGGAAGAAGATGTCAAACCTTGATAAACAGCCGTACTACGATGAGCAAGCAAGATTGAGC
AAAAGTCATCTCGAAAAATATCCGGATTATAAATACAAACCTAGGCCAAAGAGAACCTGC
ATTGTTGATGGAAAAAAGTTGAGGATATCAGAGTACAAGGCATTAATGAAAATGAGAAAG
AACGAGTTTAGAGGGGGAATATACGGATCTTCATCTGGTTCTTCCCCTCCATCCATGCCT
TATCCATCACCTCCCACAATGGTTTCATCCGCCTACAACTTCCCCACCAGTGGGGCACCG
ACTTTGAATTCAGCTGCTATGTCGAGTTTAAATCATCTATCTCCGGGTCTCAACCCCTAC
AACCTCCCTCTCAACTTGGAGCACGGACAAGATTCCCAGTCACGTGACTCAAGGTCGGCA
AGTCCACAAGGTGACGCCTAA

InterProScan

Gene3D
HMG_box_dom_sf (IPR036910) - T[139-221] 7.2E-28
SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[142-220] 2.09E-25
SMART
HMG_box_dom (IPR009071) - T[142-212] 4.8E-25
Pfam
HMG_box_dom (IPR009071) - T[143-211] 3.3E-22
ProSiteProfiles
HMG_box_dom (IPR009071) - T[143-211] 20.435

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 77.049 % 207 5.63E-61
SOX6_HUMAN 76.667 % 202 8.63E-59
SOX13_HUMAN 77.57 % 192 2.55E-56