- Transcript 'Moocci.CG.ELv1_2.S64...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S645416.g29463.01.t
Possible name(s)
DAW1; PRPF4; WDR12
Gene model
Location
S645416 [8,504 / 9,788]
Amino acid sequence
Length: 427
>Moocci.CG.ELv1_2.S645416.g29463.01.p
MAHVQVKFHTALEELAVSETPFSVIAEAGPSELGNLIKKLLSENETLNEKEETDIKSSKN
EFDFLINNQLLVTTLMQHMDSHALSTESVIEIEYILRQSPPEPESTIEHDDWISSIHSNE
EIILTGCYDSKIYLWERNSSKLNTTCAGHTDPIKAVSWLSFASDNKSFVSCSLDQSAIIW
KWNEEHNVGKAMFCCRGHSKSVDCIAIHPEKTKFSTGSWDQTIKLWSSSLSTDGEAEEES
RKYLSRKKRQKVEQRGTTRTPIFTLSGHSEAVSDLCWLTASELCSVSWDHSLRIWNIETA
TETKLLKGPKVFLCAEYSHNNKLIATGNSDRHIRLWDPRSNDGAVVKSNLTSHQGWVTCL
KWSPKIDYQLVSGSFDSYVKLWDTRSPRAPLYNVEAHNDKVMSLDWSINENILSGGADNK
LYKYNVK
Nucleotide sequence
Length: 1,284
>Moocci.CG.ELv1_2.S645416.g29463.01.t
ATGGCCCATGTGCAAGTGAAATTCCACACAGCGCTAGAAGAACTTGCAGTTTCTGAAACT
CCGTTTTCCGTTATAGCTGAAGCTGGTCCTTCTGAATTGGGAAATCTAATAAAAAAACTA
TTAAGTGAAAATGAAACTTTAAATGAAAAAGAGGAAACTGATATAAAAAGTTCTAAAAAT
GAATTTGACTTTCTCATTAACAATCAATTGTTAGTAACAACTTTAATGCAACATATGGAC
AGTCATGCATTATCAACAGAATCTGTAATTGAAATTGAATATATTTTAAGACAATCTCCA
CCAGAGCCAGAAAGTACAATAGAACATGATGATTGGATAAGCAGCATTCATTCAAATGAA
GAAATTATTTTAACTGGTTGTTATGACTCAAAAATTTATTTATGGGAAAGAAATAGTTCA
AAATTGAATACAACCTGTGCTGGTCACACCGATCCTATTAAAGCTGTATCATGGCTTTCA
TTTGCATCAGATAATAAATCATTTGTGAGTTGTTCTTTAGATCAAAGCGCTATTATTTGG
AAGTGGAATGAAGAACATAATGTTGGAAAAGCTATGTTTTGCTGTAGAGGACACTCCAAG
AGTGTAGATTGTATTGCGATTCATCCAGAAAAAACTAAATTTAGCACTGGGTCTTGGGAT
CAAACCATAAAATTGTGGTCATCCTCTTTGTCCACAGATGGCGAAGCTGAAGAGGAATCA
AGAAAATACCTAAGTCGAAAAAAGAGGCAAAAAGTTGAACAGAGAGGAACAACTCGAACA
CCTATTTTTACTCTATCAGGTCACAGCGAAGCTGTTTCAGACCTTTGTTGGTTAACTGCT
TCAGAGCTTTGCAGTGTTTCTTGGGATCATTCTTTAAGAATATGGAATATTGAAACAGCA
ACCGAAACAAAGTTATTGAAAGGCCCTAAAGTATTTCTGTGTGCAGAATATTCTCATAAT
AACAAACTAATTGCAACTGGAAATTCTGATCGTCATATTCGTCTATGGGATCCAAGGAGC
AATGATGGTGCAGTCGTAAAGAGTAATTTAACTTCTCATCAAGGATGGGTTACATGTTTA
AAATGGTCCCCGAAAATAGATTATCAGTTGGTATCAGGTTCTTTTGATAGCTATGTAAAA
TTGTGGGACACACGAAGTCCTAGAGCACCATTGTACAATGTTGAAGCTCACAATGATAAA
GTTATGTCTTTAGATTGGTCTATTAATGAAAACATTTTGTCAGGTGGGGCTGACAACAAA
TTATATAAATACAATGTAAAATAG
| Hamap |
WDR12/Ytm1 (IPR028599) - T[2-426] 29.869 |
| Pfam |
NLE (IPR012972) - T[4-79] 3.3E-13 |
| SMART |
WD40_repeat (IPR001680) - T[100-136] 0.0095 - T[139-181] 0.0013 - T[188-227] 5.5E-6 - T[258-296] 7.0E-7 - T[299-337] 0.008 - T[343-383] 1.4E-7 - T[387-425] 0.027 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[101-426] 3.0E-74 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[105-227] 7.14E-59 - T[256-426] 7.14E-59 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[106-145] 8.604 - T[195-227] 12.28 - T[265-305] 10.709 - T[317-346] 9.74 - T[350-392] 13.65 - T[394-427] 9.038 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[106-427] 39.39 |
| Pfam |
WD40_repeat (IPR001680) - T[143-181] 0.08 - T[192-227] 1.7E-6 - T[260-296] 7.3E-5 - T[313-337] 0.0017 - T[349-383] 4.8E-5 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[283-297] 2.0E-6 - T[324-338] 2.0E-6 - T[370-384] 2.0E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[283-297] . - T[370-384] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRP4_HUMAN | 25.61 % | 90.9 | 1.17E-19 |
| DAW1_HUMAN | 23.647 % | 90.5 | 1.01E-19 |
| WDR12_HUMAN | 48.821 % | 386 | 5.53E-132 |
