- Transcript 'Moocci.CG.ELv1_2.S64...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S642517.g29089.01.t
Possible name(s)
CDH18; CDH6; CDH7
Gene model
Location
S642517 [87,027 / 93,297]
Amino acid sequence
Length: 459
>Moocci.CG.ELv1_2.S642517.g29089.01.p
MDSTDVVINLIDVDEPAEFTDDEFLFYVSEDANVGHEIGAVTAFDPEGDAFWYGLENFNP
TFSVNRQTGVLTLNSKLDREDKSSHVLFVKAGSVNTAKVTIVVDDVNDNPPEPKNGENLK
VILCLNHRKERQVLLPRIEMVDKDDAKKNGAPFHYFPTSGKEYQDNFDLVDNGDNTASLR
TKHRDFRHTESEFQVPVLVSDSGSPRQNATYIVMVKTCFCSEDGVCGAVPLAAALQIEVL
VGILVTVLFLLILVILIILVKKRRSRELVGSNQKLYDEDDDIRENVITYNEEGGGEEDTA
AYDITALSLAGTPRSSITPLKMKSPLVRHRPESVDMQSFIEGHKGKEDTDPNTLAFDSLQ
VYAYEGDGSLAGSLSSIASCGTEDDDQDYDHVQEWGPRFSRLADIYDNFVQSDSEDEKDV
EPYTPFNYTFRPQGSIRKSNLRNNQSLQRPRLVRTATPL
Nucleotide sequence
Length: 2,675
>Moocci.CG.ELv1_2.S642517.g29089.01.t
AGCTTAAATCAAGTCACGATAATCATACTGGTAACGTACAATATCACTTGGAAGAGGAAG
GCGATGGAAATTTGTTTGCAATCGGTCTGACGAACGGTAAATTGGTGACGAGAAAAAAAT
TGGATCGAGAAACCAAAAGTTCATATACTTTACGAGTCTATGTAACAGATTTAAATCATA
AGCTGATTGAGGACACTTTGGCAATTGAAGTCACTGTACTGGATATAAACGACCATGAGC
CTATATTTGATGCAAAAGAATACGTTGCAGAAATAGAAGAGCGTTCAAAAATTGGTACTG
AAGTAACAACAGTTTCAGCTACGGATGGAGATGATCCAACGTTACCTTACGGACAAATCC
GATATAGCATTGTCGGAGGGTCATCCGAGTTCGCTATTCACCCGATTGACGGAATCATTC
GAACTAAAAGCAAAAATCTCGACCGAGAAAGAAAAGATACTTACTTTCTTGAAATTGAGG
CTAGAGATACTCCCAATCAACGACTGGGTTTTTCCACCAAGACTAATGTTACGATCAAGC
TTACTGATGTTAATGACAACCCACCACATTTTGAGGAACGATCTTACACAGCAAGTGTGA
AAGAGAATTTAAAAAAGGAAGACGAAGTTACTCGAATTAAAGCATCCGATGCAGATCTGG
GTAAAAATAAAGAAACGAAATATTCGCTTGACGGAAAAGACGCTGAATTTTTTACGGTCG
ATACTGTTGAAAATAGTGCGGTGATTAGACCTGCAAAAAAATTGGACTACGAAACGGCGC
TTAATCACCAATACCAAGTCGAATTGATCGCTAAGAACGTTAACAAAGATGAAAGATTTG
AATACATCAATACGATGGACTCAACCGATGTTGTAATCAATTTGATTGACGTTGACGAAC
CTGCCGAATTTACGGACGACGAATTTTTGTTCTATGTAAGCGAAGATGCTAATGTAGGAC
ATGAAATTGGCGCAGTGACAGCCTTTGACCCAGAAGGAGACGCATTTTGGTACGGTCTCG
AAAATTTCAATCCGACATTTTCCGTAAACCGCCAAACAGGAGTGTTAACTTTGAATTCCA
AGCTCGATCGAGAGGACAAGTCAAGCCACGTGTTGTTCGTAAAGGCGGGAAGCGTGAACA
CCGCTAAAGTTACGATTGTTGTAGATGACGTCAACGATAATCCACCTGAACCAAAAAATG
GCGAAAATTTGAAAGTGATATTGTGTTTGAACCACCGAAAAGAGAGACAAGTGTTGCTAC
CAAGAATTGAAATGGTTGATAAAGACGATGCCAAGAAGAACGGAGCTCCATTCCATTATT
TTCCTACTAGTGGGAAAGAGTACCAGGACAACTTTGATCTGGTTGATAACGGAGACAACA
CGGCTTCTCTACGAACAAAACACCGAGATTTCCGTCATACAGAAAGCGAATTTCAAGTCC
CAGTGCTGGTTTCCGACAGCGGATCTCCTCGTCAAAACGCGACTTACATAGTTATGGTGA
AAACGTGCTTTTGTAGCGAAGATGGAGTATGCGGGGCGGTTCCGCTCGCTGCTGCCTTGC
AAATCGAAGTTCTGGTCGGAATCTTGGTTACCGTTCTCTTCCTGCTTATCCTAGTGATTT
TGATCATCCTTGTAAAGAAGAGACGATCCAGGGAACTTGTGGGAAGCAACCAAAAGCTTT
ATGACGAAGATGATGACATAAGAGAGAACGTGATCACATACAATGAAGAAGGAGGCGGGG
AAGAAGACACTGCAGCTTATGACATCACTGCTTTGTCATTAGCTGGAACCCCGAGGAGTT
CGATTACGCCTCTTAAGATGAAATCACCTCTTGTACGCCATCGCCCGGAAAGCGTCGACA
TGCAATCTTTTATTGAAGGACATAAAGGAAAGGAAGATACAGATCCTAATACACTGGCTT
TTGACTCATTGCAGGTGTACGCTTACGAAGGCGATGGTTCGCTTGCAGGATCGTTAAGTT
CGATCGCCTCGTGCGGTACGGAAGATGATGACCAAGATTACGATCACGTGCAAGAATGGG
GTCCTCGATTTTCCCGCCTCGCGGACATCTACGATAATTTCGTACAAAGCGACAGTGAGG
ACGAAAAAGACGTAGAACCTTACACCCCGTTTAATTACACATTCAGACCGCAAGGTTCTA
TTAGGAAATCAAATTTAAGAAACAACCAATCGCTTCAACGACCAAGACTTGTTCGAACTG
CCACGCCCTTATAATTGGTGCAATTGTTAAAAAAACATTCATTTTAACTTATTTTATTTT
TTACTATTTCAGTTTTTCATATTGATTTTATTTTATAATTATGTGATCGTTTTATCAATT
TTTAATCGTGTCAAGTTTTGTTCCACGTTATTTTTTCATTTAATATTGATATTTCACAAA
ATATTTCAGTTACATTATTAACTTTTTGATACACTTACGGTAACCCATTTTCACAATCGC
CTACTGTCTTTCAACATTCATGTATATTTTGTGTGCTGTGTGCTTGTTTTAAGTTTTGTT
ATTTTTTTTTCTACCACTGTTTTCTTCATATTCATTCACAAAAATTTTGTTTGCTGACAT
GTTTTTTTCTGCAGTTTATATTTTCGATTACTTTTAATTCTGTAATATCAATTTTTACAT
TGTTTTTATTACTACAATAGAAATTGAAATCAAAA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[8-115] 4.57E-16 - T[106-216] 3.28E-8 |
| PRINTS |
Cadherin (IPR002126) - T[19-48] 1.0E-9 - T[67-93] 1.0E-9 - T[95-112] 1.0E-9 |
| Pfam |
Cadherin (IPR002126) - T[26-92] 9.8E-8 |
| SMART |
Cadherin (IPR002126) - T[41-111] 2.2E-12 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[101-111] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[272-407] 3.6E-45 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[316-411] 3.1E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH6_HUMAN | 35.499 % | 220 | 6.34E-64 |
| CADH7_HUMAN | 35.897 % | 211 | 1.41E-60 |
| CAD18_HUMAN | 36.195 % | 229 | 2.04E-67 |
