Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S602699.g24806.01.t

Possible name(s)

PABPC1; PABPC1L; PABPC4

Gene model

Moocci.CG.ELv1_2.S602699.g24806

Location

S602699 [5,929 / 7,006]

Sequences

Amino acid sequence

Length: 358

>Moocci.CG.ELv1_2.S602699.g24806.01.p
MDSEINSHSEEQKSNDLQLNNDTGNDSQAETSESLPKSENEHIGKKSPKTFPGVNLYVKN
LDDTFTDEKLRDVFKKFGAITSTKMMFESGHPKGFGFVCFSSKEEAEQAVLQMNGRIVGS
KPLYVTYAQKKEDRKAFLAKKYKEMANIAPVLPAQTIPVQPVTSPTLLPPTSPSTPTYYQ
VPNSPQNIQCQYFPAGVIQPHLHWSPVNVQSGLTVQPLPVAQPYITNPQTAAVGTYDNAP
NALMPPQPFIWTGSAPQSAYQTYPINQPSAFLPNTGNNIVATNANLPTSTFSYVTQPPPA
QSFANNHNVAGNVNARQPVAMPSFNVPQNNANTGIAVQSYARSYKHGMPSNVQHVAPQ

Nucleotide sequence

Length: 1,077

>Moocci.CG.ELv1_2.S602699.g24806.01.t
ATGGATTCTGAAATTAATAGCCACTCAGAGGAGCAAAAAAGTAATGATTTGCAGTTAAAT
AATGACACCGGTAATGATTCTCAAGCTGAAACAAGTGAATCTTTGCCAAAATCTGAAAAT
GAGCATATTGGAAAAAAAAGTCCCAAAACTTTTCCGGGAGTTAATTTGTATGTAAAAAAT
TTGGATGATACATTTACAGATGAAAAACTACGCGATGTTTTCAAAAAATTTGGAGCTATT
ACGAGTACTAAAATGATGTTTGAAAGTGGTCATCCAAAAGGTTTTGGTTTTGTTTGTTTT
AGTTCAAAAGAAGAAGCAGAACAAGCTGTGTTACAAATGAATGGGAGAATTGTGGGTTCA
AAACCGTTGTATGTGACTTATGCCCAAAAAAAAGAAGACCGTAAAGCTTTTCTAGCAAAA
AAATATAAAGAAATGGCTAATATAGCTCCTGTACTTCCGGCCCAGACAATACCTGTGCAA
CCGGTAACTTCTCCTACATTGCTACCTCCCACCTCACCATCAACTCCAACCTATTATCAA
GTGCCAAACAGTCCTCAAAATATACAATGCCAGTACTTTCCTGCCGGTGTTATTCAACCA
CACTTGCATTGGAGCCCGGTTAATGTACAAAGCGGACTGACTGTACAACCACTGCCAGTC
GCACAACCATATATAACTAACCCACAAACAGCCGCTGTCGGAACATATGATAATGCACCA
AATGCATTAATGCCCCCACAACCTTTTATTTGGACTGGTTCGGCTCCGCAAAGTGCATAT
CAAACTTATCCAATTAATCAACCAAGTGCTTTTTTACCAAATACCGGTAACAATATTGTT
GCAACAAATGCTAATTTACCCACATCCACTTTTAGTTATGTAACTCAACCACCACCAGCC
CAATCCTTCGCAAACAATCATAATGTCGCTGGTAATGTTAATGCAAGACAACCAGTTGCC
ATGCCTAGTTTTAATGTGCCCCAAAATAATGCTAATACCGGCATTGCTGTACAAAGCTAT
GCACGATCATATAAACATGGAATGCCATCCAATGTACAACATGTAGCACCACAATGA

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-137] 3.0E-29
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[50-135] 4.43E-27
ProSiteProfiles	RRM_dom (IPR000504) - T[54-130] 19.297
SMART	RRM_dom (IPR000504) - T[55-126] 8.0E-25
Pfam	RRM_dom (IPR000504) - T[56-123] 1.4E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PABP1_HUMAN	46.154 %	134	6.25E-35
PABP4_HUMAN	50 %	148	9.76E-40
PAP1L_HUMAN	45.455 %	138	3.7E-36