- Transcript 'Moocci.CG.ELv1_2.S14...' >
- EST 'AHC0AAA228YP16_RM1' >
- Transcript 'KH2012:KH.C2.216.v2....' >
- Transcript 'KH2012:KH.C6.172.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S59...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S594792.g24233.01.t
Possible name(s)
LRWD1; NEDD1; TAF5
Gene model
Location
S594792 [5,219 / 13,051]
Amino acid sequence
Length: 286
>Moocci.CG.ELv1_2.S594792.g24233.01.p
MAHKKPVQSLTFVPQHPTFLLSAGTDKRIILWDIGIPSLPDYTFTNKKLAVFAVFDNPLR
MVITSDEQYLLCGTERGLFCWDLKNKVSKLNKKKIEVFNTCTEISFPYVNVNSLVDGLAV
IKGDYMATKCAHVGVIFVWRWSDAVKLMKHNTETQKIVVPTLAELNWSTTKQYYININTC
PAKQTLFSGDEDGHIWIYDTAAVIAELENDSKSSKKKKNDKKVPEKIVQPESIVPWPKCT
RNNDEPLELLDAGIMSNDICSSSDMKYLVVASDNNMVCIYKHIPKK
Nucleotide sequence
Length: 1,926
>Moocci.CG.ELv1_2.S594792.g24233.01.t
GCGGTGGCGAGACAGTGTGCTTAACCGACTGCACCACTAACCGTGTCAAACTCCGGTTTC
ACCAGAAAAATGAGGAGTTTTATGCTTTGACATGGACCACTATTGAGCTAGTGAAAGGAG
TGAAGGATAATATATTGGCTTGTGCTGGTTGCCTTGGTTACGTCCATCTCATCCACCTAA
AACGATCTTGTGCATACGGAAGTTTTATGGCGCATAAAAAACCTGTTCAATCGCTTACGT
TTGTCCCACAGCATCCAACGTTTTTGTTGAGTGCCGGAACGGACAAAAGAATCATACTGT
GGGACATTGGTATTCCCTCCCTTCCTGACTACACTTTTACCAACAAGAAACTTGCAGTGT
TTGCAGTCTTTGATAACCCATTAAGAATGGTAATAACCAGCGACGAACAGTATCTCTTAT
GTGGGACCGAGCGAGGATTATTCTGCTGGGATTTGAAAAATAAAGTTTCAAAGTTGAATA
AAAAGAAAATTGAAGTCTTCAACACCTGCACAGAAATCTCCTTTCCATATGTAAATGTTA
ATTCATTGGTGGATGGTCTTGCTGTAATAAAGGGAGATTATATGGCAACAAAATGCGCGC
ATGTTGGAGTGATTTTTGTCTGGCGGTGGTCGGACGCTGTAAAGTTGATGAAGCATAATA
CGGAGACTCAAAAGATCGTAGTCCCTACATTGGCCGAGTTGAATTGGTCAACCACTAAGC
AATATTACATCAATATTAACACATGCCCTGCAAAACAAACGCTGTTCAGTGGAGATGAAG
ATGGTCACATTTGGATTTATGATACCGCTGCTGTAATTGCAGAGTTAGAGAACGATTCTA
AAAGTTCAAAAAAGAAGAAAAACGACAAAAAAGTCCCAGAGAAAATAGTTCAACCAGAAT
CAATCGTCCCATGGCCGAAATGCACTCGCAACAATGATGAGCCGTTGGAACTACTTGATG
CTGGAATTATGTCAAATGATATTTGTTCCAGTTCTGACATGAAGTACTTGGTCGTAGCTT
CGGATAATAACATGGTGTGCATCTACAAACATATTCCTAAAAAATGATCATTCGTGTAAA
ACCTAATGACTGTGCTTTGTGTAAACTCCTCCGTTGCAATTACTGTGCTCACTTGTTCAT
ATTTTTATGTGTTTTATACTTGCATGACTATCAAGGTGTTTTATTTTTATGCGTTTTTTT
TTACTTCACTCTTTTTTTGAACTTTTATTTTTCTTTTAATTTGCAATATTTTGATTTCAG
CAACAGCGCTACACTGCCTTTTATTTTTATTATTTTAGAGCATTTGATTTACACTGCTAT
TTTAATTAGCAAATAGATAACATGAAAGCAAAATTCTTCCGTAATATTATAGCACCTATA
CGAAATATAAACTGTCTAGCAATGTCAATTGTAAAATACATATACTACTAAATTTGCGTG
GATGTTTTATTTTAACTATTGATGATACCAAATTAAGTTTTTAAGTTACAAGAGTAGAAT
TGACTTCTATTTTACTGTTTTCTTTTGATTTAAATCCAATTTTATATTATTTGTACTTTC
TTTATTGCAACAACTTTGATCTTGCTTAATATGTAGCAAAAAATGTCCAAATGTCTACAA
ATTTTCACCAGAGCATCTTTTCTGGTGCAACTTATGTAGCTTTGTTTTAATCACTCAGCA
ATTCGAATCGTATTACGGGTCTGTACAAACACTGCCAGTCACTGTATGTAAGAAAAATAT
CAAAAGGAAATGTCACTATATTTTTAAGTGAAATTTATGTTTATTTTGCATTGGTGATAG
TTTTATTTTCATTATTTCTTAATTTAATTTTTTTCTTTTACACCGAGGCATTTGCAACTT
CTGACACACTGCATTTTTATTCAGATAAAAATGAATGTTTTTGCAATAAAATATTACGAA
GTTCAA
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[1-34] 11.611 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-283] 4.0E-31 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-42] 10.153 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[2-281] 2.93E-19 |
| Pfam |
WD40_repeat (IPR001680) - T[2-33] 0.14 |
| SMART |
WD40_repeat (IPR001680) - T[3-33] 2.1 - T[45-82] 86.0 - T[161-199] 190.0 - T[243-281] 15.0 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[20-34] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRWD1_HUMAN | 31.119 % | 144 | 4.07E-39 |