- Transcript 'KH2012:KH.C2.714.v5....' >
- Transcript 'Moocci.CG.ELv1_2.S56...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S560245.g21840.02.t
Possible name(s)
ARNT; ARNT2; ARNTL
Gene model
Location
S560245 [3,323 / 19,964]
Amino acid sequence
Length: 543
>Moocci.CG.ELv1_2.S560245.g21840.02.p
MSNKNDKSIDDMSQSDKERFARENHSEIERRRRNKMTAYITELSDMVPSCSALARKPDKL
TILRMAVSHMKQLQGTMSNASMDNSYKPSFLTDQELKHLVLEAADGFLFVASCETGQVIY
VSDTVTSILSQAHSDWLGRTIFDLVHPEDVGKIQEQLSASESQNTGRILDLKTGTVKKEG
QQSAVRMRAFICRMRCGKVQINSSTPRHLRARNTLGPVQEGEDNFAVMHVTGYIKAWPPS
GYGAPDGTSPEIPQIDETNHATNNYCLVAIARLQVTSHPSIGDLNPSSETTSFMSRHNMD
GVFTFIDTRVSNVIGFQPKDLLGKHPAEFYHPDDVEHMKESFKQVLLLKGQVFSMMYRFR
AKNDEYVWLRTSSFTFQNPYNNEVEYVVCENAIVKQNQGQMGQNASLPMSDSKSLPNPGY
SNVPLPPQEADKNMSLPLQHTQPFNVKAAQSPDVQSPTTTLNYPAQSLTHPQQAQVPSQY
STAASQMSWLQSQGASGQPLNTGIYPGGAPSYQQGTSSYPSNPTADGRNVQDGFQSQVCG
DYI
Nucleotide sequence
Length: 1,933
>Moocci.CG.ELv1_2.S560245.g21840.02.t
TTGTTTTTAGAATATTTCTTTATTTGAAAATTGGCTTTACAGGTACCGTTTAGTTTCTGG
CAGGCCTTAAGTATTTTGGGCTACAATTAGCAATTAGGCTAACATCTCACTGTTATTATA
CTACGCGTCCATTACTTATGCACAGTACCTGGTAGGCCTATATGGTAAACAAAAAAATAA
TAATAGTTAAGGCACCACAATCTTCACGGACAAGAGGAACTGTAGAAGACTGGCTATAGA
ATAGCCACTTACTTAGTTTTGTTTTTCATATAATGAGCAATAAAAATGACAAATCAATAG
ACGATATGTCACAATCCGATAAAGAGCGATTCGCGAGGGAGAACCACTCCGAGATAGAGC
GGAGAAGAAGAAACAAGATGACCGCTTATATTACAGAGTTGTCAGATATGGTGCCTAGCT
GCAGTGCGCTTGCAAGGAAACCAGACAAGTTAACGATACTGCGAATGGCGGTCTCGCATA
TGAAGCAACTGCAAGGTACCATGAGCAACGCTTCTATGGATAATTCATACAAACCATCTT
TCCTCACAGATCAGGAACTGAAACATCTCGTGCTAGAGGCGGCCGATGGATTTTTATTTG
TTGCATCGTGTGAAACCGGCCAAGTTATTTATGTCTCGGATACCGTCACCTCTATACTAA
GTCAGGCACATTCAGACTGGCTCGGTCGAACGATCTTTGATTTAGTTCATCCTGAAGATG
TTGGAAAAATACAAGAGCAATTGAGCGCTTCAGAGTCACAAAACACAGGACGCATATTGG
ACCTAAAAACGGGCACAGTGAAGAAAGAGGGCCAACAGAGCGCGGTTCGAATGAGGGCGT
TCATATGCCGCATGCGATGTGGAAAAGTCCAAATTAACAGTTCAACACCTAGGCATCTAC
GAGCAAGAAATACGCTTGGTCCAGTGCAGGAAGGTGAAGACAATTTTGCAGTGATGCATG
TTACCGGTTACATTAAAGCGTGGCCCCCTAGTGGCTACGGGGCCCCCGATGGCACTTCCC
CCGAGATCCCACAAATCGATGAGACAAATCACGCCACTAATAACTATTGCTTGGTTGCCA
TTGCTAGACTGCAGGTGACAAGCCACCCTAGTATTGGGGATTTGAACCCCTCATCTGAGA
CAACATCGTTCATGTCCCGGCACAACATGGATGGTGTGTTCACGTTTATCGACACCAGGG
TTTCTAACGTTATTGGCTTCCAACCCAAGGACTTACTCGGCAAACATCCAGCAGAGTTCT
ATCATCCAGATGACGTGGAACACATGAAAGAGAGTTTCAAGCAAGTTCTACTGCTCAAGG
GACAGGTGTTTTCGATGATGTATCGGTTCCGGGCGAAAAACGACGAGTATGTGTGGTTGC
GAACGAGTTCATTCACATTCCAAAACCCATACAATAACGAGGTTGAATATGTCGTCTGCG
AGAATGCCATCGTTAAACAAAACCAAGGTCAAATGGGTCAAAATGCGTCGCTACCGATGT
CGGATTCAAAAAGCCTCCCAAACCCAGGGTATTCCAACGTACCGCTTCCGCCACAGGAGG
CTGATAAGAATATGTCATTGCCGTTACAGCACACACAACCTTTCAATGTAAAAGCTGCCC
AGTCACCCGACGTGCAGTCGCCCACAACCACGTTGAACTATCCTGCACAGAGCTTAACTC
ACCCTCAGCAAGCGCAGGTCCCGTCACAGTACAGCACCGCAGCGTCACAGATGTCTTGGT
TACAATCTCAGGGAGCATCTGGACAACCCCTAAACACAGGGATATACCCTGGTGGAGCCC
CTTCATACCAGCAAGGCACTTCATCTTACCCAAGTAACCCCACTGCTGACGGGAGAAACG
TTCAGGATGGATTCCAGTCTCAGGTATGTGGTGATTATATATAATATTGTGGGTTAGGCA
GATGTTATAACAA
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[10-76] 5.9E-22 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[20-73] 16.971 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[22-106] 1.96E-16 |
| Pfam |
bHLH_dom (IPR011598) - T[22-74] 1.2E-15 |
| CDD |
bHLH_dom (IPR011598) - T[22-74] 1.30164E-15 |
| SMART |
bHLH_dom (IPR011598) - T[26-79] 5.8E-14 |
| PRINTS |
Nuc_translocat (IPR001067) - T[35-50] 3.6E-75 - T[55-75] 3.6E-75 - T[86-109] 3.6E-75 - T[111-130] 3.6E-75 - T[143-161] 3.6E-75 - T[184-197] 3.6E-75 - T[225-244] 3.6E-75 - T[292-309] 3.6E-75 |
| ProSiteProfiles |
PAS (IPR000014) - T[93-164] 13.805 - T[298-349] 14.707 |
| SMART |
PAS (IPR000014) - T[95-162] 1.8E-9 - T[280-347] 8.7E-5 |
| Pfam |
PAS_fold (IPR013767) - T[99-178] 1.7E-9 |
| CDD |
PAS (IPR000014) - T[104-190] 6.14053E-10 - T[293-388] 4.32647E-15 |
| SUPERFAMILY |
PAS-like_dom_sf (IPR035965) - T[105-193] 1.08E-11 - T[292-392] 1.37E-27 |
| TIGRFAM |
PAS (IPR000014) - T[296-384] 3.2E-7 |
| SMART |
PAC (IPR001610) - T[354-397] 2.9E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARNT_HUMAN | 58.851 % | 525 | 7.39E-180 |
| ARNT2_HUMAN | 59.813 % | 509 | 1.41E-174 |
| BMAL1_HUMAN | 40 % | 318 | 3.72E-101 |