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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  2. > 
  3. Region 'REG00000882' > 
  4. Region 'REG00000695' > 
  5. Transcript 'Moocci.CG.ELv1_2.S51...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S518541.g19571.01.t

Possible name(s)

TRAF4; TRAF5; TRAF6

Gene model

Moocci.CG.ELv1_2.S518541.g19571

Location

S518541 [42,754 / 46,161]

Sequences

Amino acid sequence

Length: 139

>Moocci.CG.ELv1_2.S518541.g19571.01.p
MNGNADDSDNSDHSVDDTVGYDYEFEPSLDNKHMCPICLLALRDPVQTLCGHRFCKPCIM
RCIRIRKSCPVDQSPLNENQIFQDNYAQREVLDLNTKCPHKGCEYTSELRHIAVIIKTMK
TNFTTLTKYETTGTDMHLI

Nucleotide sequence

Length: 516

>Moocci.CG.ELv1_2.S518541.g19571.01.t
CAACAAGTTCCAGACTGCTCAAGAATAACGATAAACTTGCGAGATTTCTCAGTTTGTACT
GTCAGACTGTTGTAGGTTGATTGTCCGAATTATACAATGAATGGAAACGCTGACGATTCC
GACAACAGCGATCATTCTGTAGATGACACAGTCGGTTATGATTATGAATTTGAACCAAGC
TTGGACAACAAACACATGTGCCCAATCTGCTTGTTGGCGCTACGGGACCCAGTACAAACT
CTATGCGGCCATAGATTTTGTAAACCATGTATTATGAGATGCATAAGAATACGAAAAAGT
TGTCCAGTTGACCAATCTCCATTAAACGAGAACCAAATATTTCAGGATAATTACGCTCAA
CGAGAAGTGCTAGACCTCAACACAAAGTGTCCACACAAAGGATGTGAATATACCAGTGAA
CTGCGCCACATTGCGGTAATAATTAAAACTATGAAAACAAACTTTACTACACTAACAAAA
TACGAAACTACTGGTACCGATATGCACTTAATTTAA

InterProScan

Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[15-128] 5.0E-27
PANTHER
TRAF6 (IPR027139) - T[16-112] 2.9E-28
ProSiteProfiles
Znf_RING (IPR001841) - T[35-73] 11.25
SMART
Znf_RING (IPR001841) - T[35-72] 5.4E-6
ProSitePatterns
Znf_RING_CS (IPR017907) - T[50-59] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRAF6_HUMAN 51.327 % 124 1.68E-34