- Transcript 'Moocci.CG.ELv1_2.S50...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S503803.g19106.01.t
Possible name(s)
TRIM2; TRIM3; TRIM56
Gene model
Location
S503803 [6,812 / 17,234]
Amino acid sequence
Length: 869
>Moocci.CG.ELv1_2.S503803.g19106.01.p
MAASLPPRNPSEDSEEERFTGHRMASSMDLLTKINDEFLTCQICFETYTNPKSLNCQHTF
CRKCLEEYLPSNNTVLTCPTCRTQQNLTDVGIEGLKDNFFISSMADMLKTVKEIRNDDST
STALMCDTCDIESRQPASTRCLDCTDFLCTECSTWHRRTKLTRSHKIVSLSEFESGMHNK
ELKSRAKIYCSIHEGEAAKIYCQTCQCPICHECLESNHMEHDRRTLKEEVIYQSLQIEEL
LATARDKTNVLRTMQTTMNELKVLKRGVRDQMEKAVTKTCDQFIESIQKRKQEMVNSLNS
MLATELKQIHAHEDSVEIQLSSLVSCTEFSKKVLEYGTPKEVLGLNNQMTLILHQLLETH
PALNYHKVEETPQIQFSTDENDVQIVAEKLGKLEIIKTKYPDNINKVFRDLDGFCTGDPQ
PYIPPESHIPNLQRAESMETTRMVAQIGRQGSEDGEFESTPNVAVNSVGEVVTSDYEACK
IQLYDPKGKFKDAFITEVNDKVYKPTGVAILHNDDIVVCCEDEVHIWTHEGKRVLSFGKG
FFGNCNSIAVDRENKIIVTDVTKHCVMVYKDDGTFVRQFSITSKSDVKIAEPRYVTCDSK
NNIIVSDGGNCGIKKFNSQGELLYSFGGEGPEKGQFQGPGGVAVDKNDNILVADCWNHRI
DMFTPEGTFIRHVATGNDGLHFPWSLAITKTGKLILSEDYSWCAKIFSFTELRTDSMSSM
EDITSPSSLIPDLEQLAGQFDLPNILNNKLSWWLSSPTQYDSHAHTITNSSLHHTISNPT
RTKPKSMSMTSKMSSSSDSDLTSATTSSMPPAPPPPTPAINNSNKEVLINGQVYSGGLNN
NGTHNHKKSLSGKINMYQNDLVSPIINGS
Nucleotide sequence
Length: 3,134
>Moocci.CG.ELv1_2.S503803.g19106.01.t
ATGGCTGCTAGTTTGCCTCCTCGCAATCCATCTGAAGATTCGGAGGAAGAAAGGTTCACT
GGCCACAGGATGGCAAGCTCAATGGACCTGTTAACCAAAATTAATGACGAATTTTTGACG
TGTCAGATTTGCTTCGAGACTTACACCAACCCAAAAAGCCTCAACTGCCAGCACACATTT
TGTCGCAAGTGCCTTGAAGAGTACCTACCTTCTAACAACACAGTTCTAACTTGCCCAACT
TGTAGAACTCAGCAAAATCTAACAGATGTTGGTATCGAAGGACTAAAAGATAATTTCTTT
ATATCAAGCATGGCAGACATGTTAAAAACAGTTAAAGAAATACGAAATGACGATAGTACC
TCTACAGCACTAATGTGTGATACTTGCGACATTGAATCACGCCAACCAGCGTCCACCCGG
TGTTTAGACTGCACAGACTTTCTCTGCACAGAATGCTCAACATGGCATCGGCGAACAAAA
TTAACAAGAAGCCATAAAATCGTCAGTTTATCTGAATTTGAATCAGGAATGCACAATAAA
GAATTAAAAAGTCGTGCAAAGATATACTGCTCGATACATGAAGGAGAAGCTGCAAAAATA
TACTGTCAAACCTGCCAATGTCCGATATGCCACGAGTGCCTTGAAAGCAACCACATGGAA
CATGATCGCAGGACACTCAAAGAAGAAGTAATCTATCAAAGTCTTCAGATTGAAGAATTA
CTTGCAACAGCTCGCGATAAAACGAACGTGTTGAGAACCATGCAGACGACGATGAACGAG
TTGAAAGTATTAAAAAGAGGAGTAAGAGACCAGATGGAAAAAGCTGTTACAAAAACTTGC
GATCAATTTATCGAAAGCATACAAAAGAGAAAACAGGAAATGGTGAATAGTCTTAACAGC
ATGCTTGCCACCGAGCTTAAACAGATTCACGCACATGAAGATTCTGTCGAAATCCAACTC
AGTTCCCTGGTTTCCTGTACCGAGTTTTCTAAGAAGGTTTTAGAATACGGAACACCAAAA
GAAGTTCTTGGTCTAAACAATCAAATGACGCTTATACTGCACCAATTGTTAGAAACACAC
CCTGCACTTAACTACCACAAAGTAGAGGAAACTCCTCAGATACAATTTAGTACCGATGAA
AACGATGTACAAATTGTTGCGGAAAAATTAGGCAAATTGGAAATTATAAAAACAAAGTAT
CCAGATAACATCAATAAAGTTTTTAGAGATTTGGACGGGTTTTGCACAGGAGACCCACAA
CCATACATCCCACCAGAAAGTCACATACCAAACTTGCAGCGTGCTGAATCTATGGAAACA
ACCAGGATGGTGGCTCAGATTGGGCGACAAGGATCCGAGGACGGAGAATTTGAATCAACT
CCGAACGTAGCTGTCAATTCTGTCGGGGAAGTTGTCACTTCTGACTACGAGGCTTGTAAA
ATTCAACTATACGACCCCAAGGGAAAGTTTAAAGACGCATTTATAACTGAGGTCAATGAC
AAAGTTTATAAACCAACTGGCGTCGCTATTTTGCACAACGATGACATCGTCGTCTGCTGC
GAGGACGAGGTCCACATTTGGACGCATGAAGGGAAACGAGTGCTTAGTTTTGGAAAGGGA
TTTTTTGGAAATTGCAACAGTATTGCAGTTGACAGGGAGAACAAAATCATTGTAACAGAC
GTAACAAAACACTGTGTAATGGTTTACAAGGACGATGGAACCTTTGTAAGACAGTTTTCA
ATAACATCAAAGAGCGATGTTAAGATTGCTGAGCCACGCTATGTAACATGTGATTCGAAA
AACAATATTATCGTGTCTGACGGCGGAAACTGTGGCATTAAGAAATTTAACTCCCAAGGA
GAATTACTTTACTCTTTTGGCGGGGAGGGACCTGAGAAAGGACAATTTCAAGGACCTGGT
GGAGTAGCTGTGGATAAAAATGATAACATTCTTGTAGCAGATTGCTGGAATCACAGAATC
GACATGTTTACACCAGAAGGAACATTCATTAGACATGTGGCAACAGGCAATGACGGATTA
CATTTTCCATGGTCTCTTGCCATCACGAAGACTGGGAAACTAATTTTGTCAGAAGATTAC
AGTTGGTGCGCAAAAATATTCAGCTTTACAGAACTTCGAACTGATTCTATGAGTTCTATG
GAAGACATAACTTCGCCTTCATCACTTATTCCTGACCTGGAACAACTTGCTGGACAGTTT
GATCTTCCAAATATATTAAACAACAAATTGTCATGGTGGCTCAGCTCGCCAACACAGTAT
GATTCTCATGCACACACAATAACCAATTCAAGCCTTCATCATACTATTTCAAACCCCACC
CGAACAAAGCCCAAAAGTATGTCAATGACAAGTAAGATGTCATCATCAAGTGACAGTGAC
TTAACATCAGCAACTACTTCTTCTATGCCACCAGCACCTCCCCCACCTACACCAGCCATC
AATAATTCCAACAAAGAAGTTCTTATTAACGGACAAGTATACTCTGGTGGACTAAACAAT
AATGGAACACATAATCACAAAAAATCTCTTTCAGGGAAGATTAATATGTATCAAAATGAC
TTGGTGTCTCCTATTATTAATGGTTCATGATTAGGGTGACAATAAATGATAATAATACTT
TTACCATGCTTTTGTTATAAAGTGACAGTGTGTGTGGATTTACTGAGGTTCCAAATACTG
TTTGTATTTTTCAAGGATAGTTTATTGCATGTGAACAATATGGGTATTATGGGTACAACT
AAGGTGAAAGCAAAACCACATTTAATTGACAATGTTTTTTAAACAATGTAGTTCTATCAA
AAATTATGGTGTGTTATTAAATTGAAATTAACCTGTTATTATATACTAAAATTTCCATTT
CATTGCTATTGGTTAATACATATCTTATTAGGGCAATATTTGCTAAAGATTACATACATA
CACACAAAAACCAATTTGCCAAACAAAAAAAGCTTTGATAAACAGTTTCATTTTAAGTGC
CAAATTATTATCTATTATATATTACAGCATTTGTCACTTTTACTGAATGTAATTTTTTTT
TTATTTTAAGTTAAGCGCGTTTATGGTATTTTTATATTTTATTACCTAAAATAAATAAAT
AAAAAATCATGTAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[27-104] 3.9E-17 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[41-82] 13.625 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[41-79] 1.1E-10 |
| SMART |
Znf_RING (IPR001841) - T[41-81] 6.3E-8 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[56-65] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[121-170] 9.67 - T[185-226] 11.761 |
| SMART |
Znf_B-box (IPR000315) - T[121-170] 0.0034 - T[185-226] 4.5E-5 |
| Pfam |
Znf_B-box (IPR000315) - T[187-225] 1.0E-8 |
| CDD |
Znf_B-box (IPR000315) - T[188-226] 3.86345E-8 |
| SMART |
Bbox_C (IPR003649) - T[233-359] 0.0066 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[432-627] 3.4E-43 - T[628-724] 1.4E-21 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[444-487] 8.388 - T[531-572] 9.91 - T[576-619] 9.601 - T[623-666] 14.371 - T[667-710] 6.045 |
| Pfam |
NHL_repeat (IPR001258) - T[636-660] 3.0E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRIM2_HUMAN | 31.615 % | 172 | 1.09E-44 |
| TRIM3_HUMAN | 33.553 % | 176 | 5.76E-46 |
| TRI56_HUMAN | 27.877 % | 156 | 2.44E-39 |