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TRANSCRIPT CARD

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  1. Clone 'cima816947' > 
  2. Transcript 'KH2012:KH.C5.392.v1....' > 
  3. Clone 'cicl047k20' > 
  4. Transcript 'Moocci.CG.ELv1_2.S43...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S434474.g13535.01.t

Possible name(s)

DDX39B

Gene model

Moocci.CG.ELv1_2.S434474.g13535

Location

S434474 [8,277 / 10,692]

Sequences

Amino acid sequence

Length: 335

>Moocci.CG.ELv1_2.S434474.g13535.01.p
MGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTIKAAVFFGGL
PMSKDQATIKSNCPHIVVATPGRLLALCKNKSLSLANVKHFILDECDKMLEQLDMRRDVQ
EIFRHTPHEKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLRQHYVKLKDN
EKNRRLFDLLDVLEFNQVVIFVKSVQRCVALAQLLKEQNFPAIDIHRAMNQEERLQKYQL
FKNFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS
EESDAKTLNDVQDRFEVNITELPDEIDISAYIEGR

Nucleotide sequence

Length: 1,910

>Moocci.CG.ELv1_2.S434474.g13535.01.t
ATCTGGAATGGGTAAAACAGCTGTTTTTGTCTTGGCAACTTTACAACAATTGGAACCAGT
TGATGGCCAGGTTTCAGTTCTTGTGATGTGTCATACTAGAGAACTTGCATTTCAAATCAG
TAAAGAATATGAAAGATTTTCAAAGTACATGCCTACCATAAAAGCTGCAGTATTTTTTGG
TGGACTTCCCATGTCAAAGGATCAAGCTACTATAAAAAGCAATTGTCCCCATATTGTTGT
AGCAACTCCAGGACGTTTGCTGGCATTGTGTAAAAACAAAAGTTTATCACTAGCAAATGT
GAAGCATTTTATACTAGATGAATGTGACAAAATGCTTGAGCAATTGGACATGCGAAGAGA
TGTGCAAGAAATTTTCAGACACACTCCCCATGAAAAGCAGGTAATGATGTTTAGTGCTAC
ACTTAGCAAAGATATTCGACCGGTTTGCAAAAAATTCATGCAAGATCCAATGGAGGTTTA
TGTTGATGATGAAGCAAAACTCACGCTTCATGGTTTACGACAGCATTATGTTAAGCTTAA
GGATAATGAGAAGAACAGAAGACTGTTTGATTTATTGGATGTACTTGAATTTAATCAGGT
TGTTATATTTGTAAAGTCTGTTCAGCGTTGTGTGGCATTGGCGCAGCTTCTGAAGGAACA
AAACTTTCCTGCAATTGACATCCATCGTGCTATGAATCAGGAAGAAAGGCTTCAAAAATA
TCAGTTGTTTAAAAATTTTCAAAAGCGAATTCTCGTGGCAACCAATTTATTTGGTCGGGG
TATGGATATCGAAAGAGTGAACATAGTTTTTAACTACGACATGCCTGAGGATTCAGATAC
TTATCTTCATAGGGTGGCTAGAGCAGGAAGATTTGGTACTAAAGGTCTTGCGATAACCTT
TGTTTCAGAAGAATCTGATGCAAAAACATTAAATGATGTTCAAGATAGATTTGAAGTGAA
TATTACGGAATTGCCAGATGAAATAGACATATCCGCTTACATTGAAGGACGATAAAATTA
CCTAGTTGTATGATATTGTATCAGAAGTTATATAAAATTTTTTATGAAAAAAATCATATT
GCACATGCATGCATAAACTTTTTTAACTAGTAACTTTTGTATAATGCCTTTAAACTTTAA
TAAATACTGAATCATATGTTTGTGTGGCAGTGGCTTTATTTAAGAAAATAATATTAGTTA
ACTATTCCTTCTTGATTTTCCAGTTTTTTAATCTCGACATTAAAATTATCAATATTTTCT
TGTAGTGCTTTTATTCGATCCTTGAAGTCGTGTATTTCTGTTTGAACTTTTTTCTTAGCT
GTTAAAAGTTTTTCTTTTATCTGTATTTCTTTTTCATCAAAGTCTGTTTCATGCTTATGT
GCTCCCAATGTAAGTTGGCGATTACTGGTTAACAAAGAATGCATCATTACAGTAGGATCT
TGAAATATCATTTCATCGTACCACTCAGAAACAACAGTTTTTTTACCCAACAATATATTT
GTTTCAGTTTGAAATAATTTTAGCAAATGATAAATAGTTAATGATTTTTCAGATGGATCA
TGAAAAAATATTTTAATCACAACCTCAAATTCTCCCCAACCAGTTTCTGTAATCTCGTAT
GGTGGTTTGGTAACTATTCTGATAGGATTGGCATAACTTTCGTGTAATTTGAATTGAATC
TTTTTAACATAAACAGACATGTCTTCATTTTTATATGGTTTGACATAAACGGTCCATGAA
TGAGTGTGACCATCTTCTTCTCTTTTTTTTCCAAAATACCTAGCAGTATTTCCATAAACA
ATTGGTTTTACTATAGAAACCCCTTTCATTCTTCCACCACTTCCAGCTTCTTGTGTTTCA
GAATTTCGTATCATTTTTAACTGTTTCTATTACCTTTAAAACTAAAACAA

InterProScan

Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[1-143] 3.6E-30
SMART
Helicase_ATP-bd (IPR014001) - T[1-173] 2.6E-30
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[1-157] 24.367
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[22-303] 8.77E-63
ProSiteProfiles
Helicase_C (IPR001650) - T[169-330] 21.249
CDD
Helicase_C (IPR001650) - T[172-298] 1.51469E-35
Pfam
Helicase_C (IPR001650) - T[182-290] 2.4E-23
SMART
Helicase_C (IPR001650) - T[209-290] 2.5E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
IF4A3_HUMAN 33.746 % 203 3.93E-62
DX39B_HUMAN 86.486 % 608 0
DX39A_HUMAN 84.685 % 600 0