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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.S406.5.v1....'
  2. Transcript 'Moocci.CG.ELv1_2.S40...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S409139.g12189.01.t

Possible name(s)

HDDC3; LIN37

Location

S409139 [43,566 / 57,484]

Sequences

Amino acid sequence

Length: 478

>Moocci.CG.ELv1_2.S409139.g12189.01.p
MDLKQLIATADFAARKHKDQRRKDSNKTPYINHPIGVANILAEEGNVHELVVLQAALLHD
TVEDTDTTIEEIEEKFGPIVRKIVAEVTDDKSLPKMERKRLQIVNAPNKSSHAKLVKLAD
KLYNLRDLTKEMPEGWTEERVNEYFIWAHKVVAGLRGTNSVIEEKLDEIFRSKNLNARSN
LDDVLREIVEEAKVEDSSPTKDSDDTDTQSSQDGRIQRDVKGTLSDLDTPKKTLSDFDTP
KKLAHKISRKRKKKEEFKEDKNKPNACIMKLFDRQVDLALFQEDTPLYPICRAWMNNEPQ
ERKRPCLEPPSIPVPPTNDEEMEENCILDMPPADMPWKIIQNEKYKSPRIPSPPTQCDDR
LEMYIQKPDLEPAAEDLLLAHLSRWKNIRSSWCKKAMENEKRYESGMKLLREMANKNLYT
SVVLMLSLFKFIFLIITALRHFTDLCNFSFLFLILRNIFLDFKYLLSMFQTLSCAEQI

Nucleotide sequence

Length: 1,477

>Moocci.CG.ELv1_2.S409139.g12189.01.t
AAGGTCTATAATACTAAAATACTTCAAACTACTTCAAAAAATGGACTTAAAGCAGTTAAT
TGCCACTGCTGATTTTGCTGCTCGGAAACACAAGGATCAGAGGAGGAAGGACTCCAATAA
AACACCCTACATAAATCATCCCATTGGTGTAGCCAACATTCTTGCAGAAGAAGGGAACGT
GCATGAGTTGGTTGTTCTGCAAGCTGCACTTCTTCATGACACTGTTGAAGACACAGACAC
AACCATAGAAGAAATTGAGGAAAAATTTGGCCCCATAGTAAGGAAAATAGTTGCTGAAGT
AACAGATGACAAATCTTTGCCAAAGATGGAAAGAAAAAGACTCCAAATTGTGAATGCACC
AAACAAATCCTCACATGCAAAACTTGTGAAACTTGCTGATAAGTTATACAATTTGCGGGA
TTTAACAAAGGAAATGCCTGAAGGATGGACAGAAGAACGTGTGAATGAATATTTTATTTG
GGCGCATAAAGTTGTAGCTGGTTTAAGAGGAACAAACAGTGTCATTGAAGAAAAACTTGA
TGAAATATTTCGATCCAAAAACCTAAATGCGCGTTCTAATTTGGATGATGTTTTAAGGGA
AATTGTGGAAGAAGCAAAAGTAGAGGACAGCTCTCCTACTAAAGATAGTGATGACACCGA
TACACAAAGCTCACAAGATGGAAGAATTCAAAGAGATGTTAAGGGGACACTTTCAGACTT
AGATACACCCAAAAAGACACTTTCAGACTTTGATACACCCAAAAAACTGGCTCACAAAAT
ATCAAGAAAAAGAAAGAAAAAAGAAGAATTTAAAGAAGATAAAAATAAACCAAATGCATG
TATAATGAAGCTGTTTGATCGGCAAGTAGACCTTGCATTGTTTCAAGAAGATACACCGCT
TTATCCAATATGTCGTGCATGGATGAACAATGAACCACAGGAGAGAAAGCGACCTTGCCT
GGAACCTCCAAGCATTCCTGTCCCTCCCACAAATGATGAAGAGATGGAAGAAAATTGTAT
CTTAGATATGCCGCCTGCTGATATGCCTTGGAAAATAATCCAAAACGAAAAATATAAAAG
TCCGAGGATCCCTTCTCCTCCCACACAATGTGATGATAGGCTAGAAATGTACATTCAGAA
ACCGGATCTTGAGCCAGCAGCTGAAGATCTGTTACTTGCGCATTTATCACGATGGAAGAA
TATAAGAAGCAGTTGGTGTAAAAAGGCAATGGAGAATGAAAAGCGTTATGAATCAGGAAT
GAAGTTGCTGCGGGAAATGGCAAACAAAAACCTTTATACTAGTGTTGTCTTGATGTTATC
ACTTTTTAAATTTATTTTCTTAATAATTACAGCCTTGCGTCATTTTACTGACCTTTGCAA
CTTTAGCTTTCTCTTTCTTATTTTAAGAAATATTTTTTTGGATTTTAAATATTTACTGTC
AATGTTTCAGACCTTATCTTGTGCAGAACAGATATAA

InterProScan

Pfam
HD/PDEase_dom (IPR003607) - T[11-136] 2.5E-19
SMART
HD/PDEase_dom (IPR003607) - T[26-134] 7.9E-6
CDD
HD/PDEase_dom (IPR003607) - T[29-145] 1.12451E-7
ProSiteProfiles
HD/PDEase_dom (IPR003607) - T[30-125] 12.877
Pfam
LIN37 (IPR028226) - T[259-410] 5.4E-33

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MESH1_HUMAN 65.116 % 236 4.52E-76
LIN37_HUMAN 34.343 % 87.4 1.57E-19