Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S402188.g11832.01.t

Possible name(s)

TUBB; TUBB4A; TUBB4B

Gene model

Moocci.CG.ELv1_2.S402188.g11832

Location

S402188 [466 / 1,720]

Sequences

Amino acid sequence

Length: 188

>Moocci.CG.ELv1_2.S402188.g11832.01.p
MREILHLQAGQCGNQIGSKKDKFCDNLLMRICKFWEVISDEHGIDPTGTYHGDSDLQLER
INVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFIFGQSGAGNNWAKGHY
TEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRMMNT
FSVVPSPK

Nucleotide sequence

Length: 564

>Moocci.CG.ELv1_2.S402188.g11832.01.t
ATGCGTGAAATACTACATCTACAAGCCGGTCAATGTGGAAATCAAATTGGTTCCAAGAAA
GATAAGTTTTGTGATAATTTATTAATGCGAATTTGCAAATTTTGGGAAGTAATCTCCGAT
GAACACGGTATCGACCCAACTGGAACATACCACGGTGACAGCGATCTCCAATTGGAGAGA
ATCAACGTCTACTACAATGAAGCAACTGGTGGAAAATACGTTCCCCGTGCCGTCCTCGTT
GATTTGGAACCCGGAACTATGGATTCCGTCAGATCCGGACCTTTCGGACAAATTTTCCGA
CCAGATAATTTCATATTTGGACAAAGCGGAGCTGGCAACAACTGGGCCAAAGGTCACTAC
ACAGAGGGAGCTGAGCTCGTAGATTCAGTTCTTGATGTTGTGCGAAAGGAAGCCGAAAGT
TGCGATTGCCTTCAAGGATTCCAACTCACACACTCGCTTGGTGGTGGTACCGGTTCCGGT
ATGGGAACTCTCCTCATCAGTAAAATCCGTGAAGAATATCCCGATAGGATGATGAATACT
TTTAGCGTTGTCCCATCACCAAAA

InterProScan

ProSitePatterns	Beta-tubulin_BS (IPR013838) - T[1-4] .
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-187] 4.32E-69
Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-188] 9.9E-82
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[3-186] 1.6E-49
PANTHER	Tubulin (IPR000217) - T[21-188] 5.7E-119
PANTHER	Beta_tubulin (IPR002453) - T[21-188] 5.7E-119
PRINTS	Tubulin (IPR000217) - T[24-44] 9.2E-62 - T[65-84] 9.2E-62 - T[107-118] 9.2E-62 - T[120-144] 9.2E-62 - T[146-164] 9.2E-62 - T[165-186] 9.2E-62
PRINTS	Beta_tubulin (IPR002453) - T[55-72] 1.5E-34 - T[102-113] 1.5E-34 - T[122-140] 1.5E-34 - T[166-178] 1.5E-34
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[61-188] 2.4E-13
ProSitePatterns	Tubulin_CS (IPR017975) - T[154-160] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TBB4B_HUMAN	90.426 %	354	3.67E-123
TBB5_HUMAN	88.298 %	320	6.99E-110
TBB4A_HUMAN	88.83 %	321	4.57E-110